International Journal of Genomics / 2019 / Article / Tab 1

Research Article

DREB Genes from Common Bean (Phaseolus vulgaris L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity

Table 1

Single-nucleotide polymorphisms, polymorphic information content (PIC), and number of haplotypes within the sequences of four PvDREB genes, based on 17 common bean genotypes.

GeneLength of the amplified sequences (bp)Number of SNPAverage PICNumber of haplotypesNumber of nonsynonymous substitutions caused by SNP and INDEL

PvDREB1FORF: 882, intron: 288100.4325-
PvDREB2AORF: 600, intron: 65090.41261
PvDREB5AORF: 474, 48310.47520 (SNP) and 3 (INDEL)
PvDREB6BORF: 957180.40859

SNPs from G40111 were not included for comparisons. Number of amino acids changed due point mutations or frame shifts and INDEL. Frame shifts were not accounted. The size of the ORF was different between Andean (474 bp) and Mesoamerican (483 bp) due to an INDEL not accounted here. Not analyzed since no complete sequences were obtained.

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