Genome-Wide Identification and Analysis of Variants in Domestic and Wild Bactrian Camels Using Whole-Genome Sequencing Data

Table 3

Functional classification of the identified SNPs for Iranian and non-Iranian domestic and wild Bactrian camels.

SNPs	Bac1	Bac2	DC399	DC408	WC247	WC408
Intergenic	2,157,352	2,026,747	1,686,366	1,778,200	2,000,316	1,992,040
Intron	1,300,679	1,222,106	1,030,347	1,081,521	1,232,401	1,223,725
Upstream gene	214,053	198,502	169,131	170,057	196,542	197,060
Downstream gene	172,846	161,897	141,099	141,095	163,895	162,438
Synonymous	20,755	19,210	15,733	15,013	18,724	18,359
Missense	20,003	19,224	14,741	14,208	16,861	16,529
3 UTR	16,569	15,358	12,636	12,419	15,186	15,073
nc transcript exon	5,174	5,114	4,369	4,224	4,899	4,715
5 UTR	4,219	3,928	2,240	2,242	2,601	2,522
nc transcript	669	614	465	430	513	509
Stop gained	203	206	142	144	182	185
Stop lost	148	139	97	100	108	106
Splice region	144	126	85	100	112	110
Start lost	38	36	32	30	33	37
Stop retained	13	15	13	8	20	14
Initiator codon	5	4	2	2	2	3
5 UTR premature start codon gain	5	7	11	4	9	1
Multi_annotated SNPs	4,372	4,241	3,150	3,064	3,760	3,718