Populations of Select Cultured and Uncultured Bacteria in the Rumen of Sheep and the Effect of Diets and Ruminal Fractions
A Weighbor-joining tree based on the full-length sequences recovered in this study and their mostly similar sequences found in the RDP database. The taxa to which the sequences were assigned to are also shown. The values in brackets are the confidence level obtained from the Classifier program of RDP. The tree was rooted with the sequence of Lactobacillus ruminis (T); NBRC 102161. The numbers at branching points are bootstrap values based on 100 replicates. The scale bar represents 0.1 substitution per site. Sequences obtained in this study were shown in bold. The uncultured bacteria that were quantified by qPCR were also underlined.
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