International Journal of Microbiology

International Journal of Microbiology / 2020 / Article

Research Article | Open Access

Volume 2020 |Article ID 1702037 |

Laila Muñoz Castellanos, Nubia Amaya Olivas, Juan Ayala-Soto, Carmen Miriam De La O Contreras, Miriam Zermeño Ortega, Fabiola Sandoval Salas, Leon Hernández-Ochoa, "In Vitro and In Vivo Antifungal Activity of Clove (Eugenia caryophyllata) and Pepper (Piper nigrum L.) Essential Oils and Functional Extracts Against Fusarium oxysporum and Aspergillus niger in Tomato (Solanum lycopersicum L.)", International Journal of Microbiology, vol. 2020, Article ID 1702037, 8 pages, 2020.

In Vitro and In Vivo Antifungal Activity of Clove (Eugenia caryophyllata) and Pepper (Piper nigrum L.) Essential Oils and Functional Extracts Against Fusarium oxysporum and Aspergillus niger in Tomato (Solanum lycopersicum L.)

Academic Editor: Simona Nardoni
Received23 Jan 2020
Revised04 Mar 2020
Accepted10 Mar 2020
Published01 May 2020


In this study, hydrodistillation was used to obtain essential oils (EOs) from pepper (Piper nigrum L.) and clove (Eugenia caryophyllata) and co-hydrodistillation (addition of fatty acid ethyl esters as extraction co-solvents) was used to obtain functional extracts (FEs). Antifungal activity of EOs and FEs was evaluated by determination of minimum inhibitory concentration (MIC) against Fusarium oxysporum and Aspergillus niger. The results showed that pepper (Piper nigrum) and clove (Eugenia caryophyllata) essential oils and their functional extracts are effective in vitro at concentrations from 400 to 500 ppm after 10 days of culturing. The essential oils and functional extracts were used on tomato fruit samples at three different concentrations: 350, 400, and 450 ppm5. Clove essential oil reduced the growth of Aspergillus niger from 50% to 70% and Fusarium oxysporum to 40%. The functional extracts (FEs) of clove and pepper, mixed with ethyl decanoate (FEs-C10), were the best combination for protecting the tomato fruit in vivo against both phytopathogenic fungi. Gas chromatography-mass spectrometry (GC-MS) was used to identify eugenol as the principal compound in clove oil and limonene, sabinene, and β-caryophyllene in pepper oil.

1. Introduction

Tomato (Solanum lycopersicum L.) is the second most consumed vegetable worldwide [1]. Tomatoes are an important source of lycopene, carotenes, ascorbic acid, and potassium [2]. However, this crop is affected by several diseases caused by a wide number of pathogens, resulting in reduction in fruit yield and quality, coupled with large economic losses [1, 3]. Vascular wilt caused by Fusarium oxysporum is a serious soil disease of tomato [4]. The pathogen attacks susceptible plants by root infection and then clogs the vascular system with mycelia or spores causing vascular and leaf discoloration, often leading to the death of the plant [5, 6]. Likewise, Aspergillus niger is one of the major pathogenic fungi in tomato fruit, such as Helminthosporium solani and Penicillium digitatum [7] One of the most prominent alternatives to conventional agriculture is the use of plant products which have been shown to control many phytopathogens previously reported [7, 8]. Essential oils are one of these plant products with great potential for controlling plant diseases, since they present antibacterial, antiviral, antifungal, and insecticide activity [8, 9]. The antimicrobial activity of essential oils is directly correlated with the presence of their bioactive volatile components such as terpene compound (mono-, sesqui-, and diterpene), alcohols, acids, esters, epoxides, aldehydes, ketones, amines, ethers and phenols [9, 10]. The antifungal action of essential oils may be attributed to their capability to disrupt cell wall and cell membrane and coagulate the cytoplasm, and hence they damage cellular organelles and allow escape of macromolecules [1113]. The lipophilic nature of EOs allow them to pass through the cell wall and damage the cytoplasmic membrane while disrupting various layers of polysaccharide, fatty acids, and phospholipids, eventually making them permeable [1416]. Recently, antifungal mechanism of action of EOs has been reported by measuring the ergosterol content of plasma membrane of test fungi [17]. Ergosterol is a major sterol component of the fungal cell membrane responsible for maintaining the cell function and integrity. Ergosterol is found almost exclusively in fungi and therefore used extensively as an indicator of fungal biomass [18]. The most common method of essential oil extraction is by hydrodistillation, although petroleum-derived solvents are also used to purify plant-derived compounds. However, the latter method can be dangerous because of the use of explosive and toxic solvents. An option would be the use of alternative solvents, also known as green solvents because they are not derived from petroleum products; therefore, they are not as detrimental to the environment. Among those alternative solvents, fatty acid ethyl esters extracted from plants are becoming an important option because of their amphipathic property and biodegradability, and they are also nontoxic and nonirritable [19]. The aim of the present work was to evaluate the antifungal effects of essential oils and functional extracts from clove (Eugenia caryophyllata) and pepper (Piper nigrum L.) for reducing the severity of Fusarium oxysporum and Aspergillus niger wilt in tomato (Solanum lycopersicum L.) using a series of in vitro and in vivo evaluations.

2. Materials and Methods

2.1. Raw Material

The vegetal material used in this study was Clove (Eugenia caryophyllata) and pepper (Piper nigrum L.) provided by Comercial Cordona from Chihuahua, Mexico. The fatty acid ethyl esters used as co-solvent in the co-hydrodistillation process were ethyl decanoate (C10, CAS number 110-38-3, 99%, Sigma-Aldrich), ethyl undecanoate (C11, CAS number 627-90-7, 99%, Sigma-Aldrich), ethyl dodecanoate (C12, CAS number 106-33-2, 99%, Sigma-Aldrich), and ethyl tetradecanoate (C14, CAS number 124-06-1, 99%, Sigma-Aldrich). Isolates of Fusarium oxysporum and Aspergillus niger were used in this study. The strains are part of the Fungi Culture Collection of the School of Chemical Sciences.

2.2. Extraction of Essential Oils (EOs) and Functional Extracts (FEs)

Clove (Eugenia caryophyllata) and pepper (Piper nigrum L.) were individually subjected to a hydrodistillation process using the modified Schilcher device. In hydrodistillation, the plants were immersed in water, where the system was heated to the boiling point of water. For co-hydrodistillation, fatty acid ethyl esters were added as co-solvent, and the homogeneous mixture was called functional extracts (FEs). The fatty acid ethyl esters used in this study were ethyl decanoate (C10, CAS number 110-38-3), ethyl undecanoate (C11, CAS number 627-90-7), ethyl dodecanoate (C12, CAS number 106-33-2), and ethyl tetradecanoate E14, CAS number 124-06-(1). For this process, 200 g of vegetal material, 4 L of water, and 20 mL of ethyl ester were used for the clove and pepper [20].

2.3. Analysis of Essential Oils and Functional Extracts

The essential oil and functional extracts were collected and diluted with hexane in a volumetric flask; the solutions obtained were analyzed by GC-MS (gas chromatography-mass spectrometry). The analysis of essential oils and functional extracts was conducted using a gas chromatographic system (Perkin-Elmer Instrument, Auto system XL, USA) equipped with a DB-5 column (5% phenyl methylpolysiloxane, 20 m × 0.1 mm i.d. and 0.4 µm film thickness) and a mass spectrometer (Perkin-Elmer instruments TurboMass Gold) as detector.. The carrier gas was helium, at a flow rate of 1 ml/min. For the GC-FID analysis, the temperature was increased from 60°C to 180°C at 1°C/min. The injector and detector temperature were set at 180°C.

2.3.1. Effect of Essential Oils on Radial Growth: Minimum Inhibitory Concentration (MIC)

In order to prove the efficacy of the bioactive compounds of EOs and FEs against F. oxysporum and A. niger, the final concentrations of each used in potato dextrose agar (PDA) were 100, 200, 300, 400, and 500 ppm. The controls were prepared with agar and ethanol and pure ethyl decanoate, ethyl undecanoate, ethyl dodecanoate, and ethyl myristate at a 100 ppm concentration. Treatments were randomly arranged with four replications. To promote infection, treated tomato fruits were kept in a humid chamber at 30°C in darkness. The diameter of the radial growth caused by Fusarium oxysporum and Aspergillus niger was measured 10 days after inoculation.

2.4. Inoculum Production

The inoculum was prepared by culturing Fusarium oxysporum and Aspergillus niger in darkness at 25°C on PDA for 14 days in Petri dishes. The conidial suspension was prepared with sterile distilled water and Tween 80 and quantified by a Neubauer chamber to adjust at 1.5 × 105 conidia/mL.

2.5. In Vivo Protection Assay

For the in vivo assays, three concentrations were tested: 350, 400, and 450 ppm, but only with the clove essential oil (EO), as well as different clove extracts (FEs) with different esters.

Fresh and healthy round tomatoes (Solanum lycopersicum L.) were disinfected with 90% ethanol and rinsed with sterile distilled water. A 6 mm diameter hole was made on the skin of the tomato fruit using a sterile cork-borer, and then 100 μL of the spore suspensions (1.5 × 105 conidia/mL) was added on the area; then the epidermis was put back and sealed with sterile petroleum jelly (only on the edges of the cut to avoid fruit oxidation). After fungal inoculation, tomato fruits were sprayed with EO and FEs at 350, 400, and 450 ppm. Control tomato fruits were sprayed with sterile distilled water-ethanol (2%). Treatments were randomly arranged with three replications. To promote infection, treated tomato fruits were kept in a humid chamber at 28°C in darkness. The diameter of the rotting area caused by Fusarium oxysporum and Aspergillus niger was measured every day during fifteen days’ postinoculation.

3. Results and Discussion

3.1. Chemical Composition of Plant Essential Oils and Functional Extracts

The results obtained from the extraction process show that when comparing the extraction yields obtained by the hydrodistillation and co-hydrodistillation methods for each spice, the yield for clove is higher than pepper. This behavior is observed likewise in the percentages obtained from each of the functional extracts. This can be explained generally because in the plant, essential oils are stored or located in glands, conduits, sacs, or glandular hairs or in reservoirs in the plant; therefore, the exposure of these reservoirs to the action of the distillation vapor allows the vapor to soften or break the walls of the oily glands, releasing the oils, favoring extraction yield [11]. Results obtained from the chromatographic analysis are detailed in Table 1, which shows the principal components of clove and pepper essential oils and functional extracts. In the clove extracts, Eugenol was identified as majority component, which is also found in majority proportion (70–85%). Other determined components are the esters ethyl decanoate, ethyl undecanoate, ethyl dodecanoate, and ethyl tetradecanoate, whose percentage corresponds to 4–17% of the relative composition; these were added in the co-hydrodistillation process. In addition to these components, there were identified eugenyl acetate (15%) and β-caryophyllene. These results match Hernández-Ochoa et al. [21] and Jirovetz et al. [22], who report that clove essential oil may contain up to 90% eugenol, in addition to eugenyl acetate (2% to 7%), as well as the presence of caryophyllene. In the case of the pepper essential oil, it was determined the presence of limonene (18.8%), sabinene (16.5%), β-caryophyllene (15.6%), and β-pinene (10%) as majority compounds; in addition to this, another group of compounds was determined at a lower proportion (Table 2). These results are consistent with the reports of several authors [23, 24], where these are identified as majority compounds; however, they mention the presence of a total of 22 compounds in some cases, which differ from the total 8 compounds that were determined at a lower proportion. This difference in the chemical composition may be attributed to the origin of the fruit, as well as to different growing and/or simple conservation conditions.

CompoundRetention timeMolecular weightMolecular formulaComposition (%)

Eugenyl acetate21.26206C12H14O35.5

Compound(1)KI(2)Molecular weightMolecular formulaComposition (%)

Linalool1 098154.25C10H18O1.1
Germacrene B1560204.35C15H241.4

1Main compounds in essential oil.2Kováts indices in reference to n-alkanes (C8-C22).
3.2. Fungi Identification

Fusarium oxysporum showed an exponential growth, as well as a flat cottony morphology that tended to extend, developing a white aerial mycelium as observed in Figure 1. It can be observed the production of a mycelium of characteristic white color which turned into pink salmon; it was also observed that white colonies spread pigmentation to the medium. After 72 hours, the growth of the colonies was 2 cm. Microscopically were observed abundant microconidia, which are generated in simple phialides emerging laterally; they present a slightly curved oval-elipsoid form, and they lack septa. Macroconidia also present a pedicelled base; some have three to five septa; three-septate spores were more common. These results match the research of Nelson [25], where it is mentioned the presence of three kinds of spores: macroconidia, elongated spores with 3 to 5 septa, with a shape typical of the genus; microconidia, oval shaped and abundant; and chlamydospores that allow distinguishing F. oxysporum from F. moniliforme [10]. In the case of Aspergillus niger, it was observed that colonies, initially white, grew fast; however, the mycelial surface was covered with black spots that represent Aspergillus heads (Figure 1), measuring up to 1 mm in diameter, charged with black spores that turned into a pulverulent culture, forming a dense felt of erect conidiophores. The observed microscopic characteristics showed that it presents a single conidiophore originated in a partitioned hypha; this aerial conidiophore ends in an enlarged vesicle containing double or single projections; these are phialides, out of which extends a single, sometimes long chain of small round conidia [26].

3.3. Evaluation of In Vitro Antifungal Activity of EOs and FEs
3.3.1. Antifungal Activity of Clove (Eugenia caryophyllata)

The extracts’ in vitro fungicide activity was evaluated by determining the capacity of inhibition of mycelial growth of each of the species under study. The clove essential oil presented the greater biological activity of all the treatments used, achieving a total inhibition of the growth of the species evaluated. In the treatment of clove essential oil against Fusarium oxysporum, the biological activity was proportional to the increase in concentration, as shown in Table 3. It is observed a mycelial growth of 5.6 cm at a concentration of 100 ppm, with mycelial growth significantly reduced to 400 ppm (0.44 cm). At 500 ppm, it is observed a total inhibition of F. oxysporum, with the essential oil showing greater inhibition compared to the growth of the corresponding control sample at 7.72 cm. The same behavior was observed against the species Aspergillus niger; the results obtained show a mycelial growth of 6.12 at a concentration of 100 ppm, which is modified at 200 ppm obtaining a value of 1.98 cm; total inhibition is observed at 400 ppm and above. In the case of clove functional extracts against mycelial growth of F. oxysporum (Table 3), the same behavior of the essential oil was observed, that is, an average growth of 6.5 cm was observed at a concentration of 100 ppm. The extracts of clove-C10 and clove-C12 showed a mycelial growth for A. niger of 6.23 cm and 6.38 cm, respectively, at 100 ppm, very similar to the growth obtained at the same concentration of the clove essential oil. In the case of the extracts of clove C11 and C14 it was observed a mycelial growth similar to A. niger at 100 ppm of 7.17–7.19 cm, higher values than those obtained with the clove essential oil. Different studies have demonstrated that clove essential oil possesses in vitro antifungal activity, affecting species that often develop in food, such as Paecilomyces, Penicillium sp., Rhizopus sp., Rhizomucor sp., and even some species of Aspergillus [27]. It has also been demonstrated in vitro that clove inhibits the growth of Aspergillus flavus, A. niger, Fusarium oxysporum, F. chrysogenum, and Penicillium sp., starting at 500 and 1000 ppm [28]. Generally, the main components in essential oils reflect their biophysical and biological characteristics [9]. However, it is reasonable to assume that the biological activity of the clove essential oil can be related to the presence of a high concentration of Eugenol (75–100%) [29]. Components with phenolic structure such as eugenol are highly active against microorganisms [30]. This phenolic compound can denature proteins, and it reacts with phospholipids of the cell membrane that change their permeability [31], which is explained by the acid nature of the hydroxyl group, which forms a hydrogen bond with an active enzymatic core.

Clove (Eugenia caryophyllata)Pepper (Piper nigrum L.)
Fusarium oxysporumAspergillus nigerFusarium oxysporumAspergillus niger


3.3.2. Antifungal Activity of Pepper (Piper nigrum)

Pepper essential oils and functional extracts did not show a significant inhibition activity against Fusarium oxysporum and Aspergillus niger. In the case of the essential oil, it was observed a growth of 7.5 cm at 100 ppm and of 7.3 cm at 200 ppm, confirming that it remains constant up to 500 ppm where it is observed a reduction to 6.0 cm. In all the pepper functional extracts, there was a very similar behavior to essential oil, since in the extracts it was observed an average growth of 7.3 cm at concentrations of 100, 200, and 300 ppm, while at 400 and 500 ppm, there was a reduction to 6.8 cm and 6.5 cm, respectively. In the case of Aspergillus niger, the growth was not affected significantly by the pepper essential oil, which at the concentrations of 100–300 ppm remained between 7.33–7.36 cm; however, at 400 ppm, there was a slight decrease to 6.81 cm. In the functional extracts, it is observed a similar behavior, obtaining lower growth in the extract pepper-C14 of 7.25 cm and a maximum mycelial growth of 7.7 cm after the incubation period. Therefore, it may be concluded that pepper did not show fungistatic and fungicide activity before both fungi. However, studies have shown that pepper essential oil presents antifungal activity particularly against fungi such as Trichophyton terrestre, T. tonsurans, Candida albicans, Monosporium apiospermum, A. fumigatus, A. nidulans, Sporotrichum schencki, and Histoplasma capsulatum [32]; this antimicrobial activity of the essential oil is influenced by their chemical composition, constituted by a combination of monoterpenoids and sesquiterpenoids considered responsible of the activity against organisms [33]. Some authors [34, 35] mention that the primary target of antimicotic chemotherapeutic agents is the fungus membrane. Most fungi contain ergosterol as the main component of the membrane, except for some oomycetes. Thus, many antimicotic agents act either fixing ergosterol or blocking biosynthesis, inhibiting an enzyme of the group cytochromes P-450 which catalyzes one of the first steps in esterol biosynthesis in fungi and animal cells, producingdemethylation of lanosterol, biosynthetic precursor of cholesteroland ergosterol. Others antimycotic agents block squalene epoxidase and are often used as topicals.Therefore, strategies that alter or block ergosterol synthesis affect permeability of cell membrane and the activity of enzymes linked to such membrane, which leads to inhibition of growth and later to cellular death.

3.4. Evaluation of In Vivo Antifungal Activity of EOs and FEs

Based on the results obtained in the in vitro tests, it was evaluated the biological activity of essential oils and functional extracts against F. oxysporum and A. niger with in vivo methods. The damage in the tomato fruit was analyzed. In the evaluation, the extracts with the higher inhibitory activity were used, that is, the clove essential oil and functional extracts: clove-C10, clove-C11, clove-C12, and clove-C14, at concentrations of 350 ppm, 400 ppm, and 450 ppm. The results obtained are shown in Table 4, where it can be observed that on the tomato surface there is a circular area, white at the beginning, evolving to a darker color. The lesions are observed covered with a cottony cluster of white mycelium, which causes softening and destruction of vegetable tissue; no exudate is produced, but dehydration and destruction of tissue occurs. As it can be observed, it was not possible to determine whether the clove essential oil and some functional extracts were capable of inhibiting the growth of F. oxysporum, except for the extract clove-C10 where it could be observed a significant variation in each treatment. Soft rot generated by A. niger could also be observed in the treatments where no inhibition was determined, with the presence of a fungal mass; in addition to this, no fungal development was present in the fruit surface, causing necrosis of the tissue that develops from the inoculation site to the internal region. Therefore, we can confirm that the essential oils and functional extracts evaluated in vivo against the species A. niger and F. oxysporum in the tomato fruit did not show strong inhibition; however, total inhibition could be demonstrated in the in vitro tests; this can be attributed to the existence of some factors that may affect the antifungal efficiency, such as the food components, inactivation due to the addition of other component, effects of pH over antifungal stability and activity, unequal distribution in the food matrix, and low solubility of extracts [36]. Additionally, Aguilar-Gonzalez et al. [37] demonstrated in vitro the effectiveness of mustard EO vapor against A. niger in tomatoes and concluded that mustard EO contains highly volatile compounds with strong inhibitory effects. However, these results were obtained with essential oils used in the vapor phase.

Fusarium oxysporumAspergillus niger
EO/FEs350 ppm400 ppm450 ppmControl350 ppm400 ppm450 ppmControl

Clove EO

4. Conclusions

In conclusion, clove (Eugenia caryophyllata) and pepper (Piper nigrum L.) essentials oils and functional extracts could provide an alternative solution to the use of hazardous chemical fungicides for the treatment of tomato fruit during storage and transportation to reduce postharvest infection. In view of the economic importance of tomato, the possibility of using products with a lower risk to human health and the environment than synthetic pesticides in controlling Fusarium oxysporum and Aspergillus niger wilt is very promising.

Data Availability

The data used to support the findings of this study are included within the article.

Conflicts of Interest

The authors declare that they have no conflicts of interest regarding the publication of this article.


The authors thank the Facultad de Ciencias Quimicas at the Universidad Autonoma de Chihuahua for the economic support to conduct this study.


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Copyright © 2020 Laila Muñoz Castellanos et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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