|
| Tool and website | Cost and functions of the tool |
|
| Array Designer http://www.premierbiosoft.com/dnamicroarray/index.html | Design primers and probes for oligo and cDNA expression microarrays. It can also design probes for SNP detection,
single exon, whole gene, tiling, and resequencing arrays. The software is not free. |
| ArrayScribe http://www.nimblegen.com/products/software/arrayscribe.html | Free, but limited to designing
NimbleGen Arrays. The tool can design probes, specify mismatches at specific
sequence positions, automatically generate mismatches, generate multiple
probes for a gene, and design the placement of spots on an array. |
| eArray http://earray.chem.agilent.com/earray/login.do | Free, but limited to designing
Agilent arrays. Can design probes for expression, CGH, and ChiP for any species with
genomic sequence. |
| Primer3Plus http://www.bioinformatics.nl/cgi-in/primer3plus/primer3plus.cgi | Free software that can design probes for expression detection on
arrays, amplification/cloning, and sequencing/resequencing. |
| Sarani Oligo Design http://www.strandls.com/oligodesign.html | Probe design for expression analysis. The software is not free. |
| Visual OMP http://www.dnasoftware.com/Products/VisualOMP | Design software for RNA,
DNA, single or multiple probe design, microarrays, TaqMan assays, genotyping,
single and multiplex PCR, secondary structure simulation, sequencing, genotyping. |
|
