SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation

Table 1

Distribution of SSR/minisatellite motifs according to the number of repeats.

Repeats	Mono-	(%)	2-mer	(%)	3-mer	(%)	4-mer	(%)	5-mer	(%)	6-mer	(%)	7-mer	(%)	8-mer	(%)	9-mer	(%)	10-mer	(%)	Total	(%)
3	0	—	0	—	0	—	0	—	0	—	0	—	78	95.12	6	100	24	96	5	100	113	2.89
4	0	—	0	—	0	—	0	—	348	81.69	323	82.82	4	4.88	0	0	1	4	0	0	676	17.30
5	0	—	0	—	0	—	181	72.11	69	16.20	45	11.54	0	0	0	0	0	0	0	0	295	7.55
6	0	—	0	—	0	—	41	16.33	7	1.64	13	3.33	0	0	0	0	0	0	0	0	61	1.56
7	0	—	0	—	1220	61.31	9	3.59	0	0	5	1.28	0	0	0	0	0	0	0	0	1234	31.58
8	0	—	0	—	441	22.16	9	3.59	1	0.23	1	0.26	0	0	0	0	0	0	0	0	452	11.57
9	0	—	0	—	173	8.69	4	1.59	0	0	1	0.26	0	0	0	0	0	0	0	0	178	4.56
10	0	—	125	21.04	68	3.42	1	0.40	0	0	2	0.51	0	0	0	0	0	0	0	0	196	5.02
11	0	—	82	13.80	32	1.61	3	1.20	0	0	0	0	0	0	0	0	0	0	0	0	117	2.99
12	0	—	76	12.79	18	0.90	1	0.40	0	0	0	0	0	0	0	0	0	0	0	0	95	2.43
13	0	—	71	11.95	5	0.25	1	0.40	0	0	0	0	0	0	0	0	0	0	0	0	77	1.97
14	0	—	39	6.57	2	0.10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	1.05
15	0	—	44	7.41	5	0.25	0	0	1	0.23	0	0	0	0	0	0	0	0	0	0	50	1.28
16	0	—	30	5.05	2	0.10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	0.82
17	0	—	33	5.56	1	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	0.87
18	0	—	15	2.53	3	0.15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0.46
19	0	—	17	2.86	1	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0.49
20	21	15.22	14	2.36	2	0.10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37	0.95
21	19	13.77	8	1.35	2	0.10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0.74
22	15	10.87	6	1.01	3	0.15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	0.61
23	8	5.80	7	1.18	3	0.15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0.46
24	3	2.17	5	0.84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0.20
25	9	6.52	5	0.84	1	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0.38
26	5	3.62	4	0.67	2	0.10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0.28
27	3	2.17	1	0.17	1	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0.13
28	1	0.72	3	0.51	3	0.15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0.18
29	4	2.90	0	0	1	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0.13
30	2	1.45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0.05
31	9	6.52	2	0.34	1	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0.31
32	3	2.17	3	0.51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0.15
33	3	2.17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0.08
34	1	0.72	1	0.17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0.05
35	6	4.35	1	0.17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0.18
36	1	0.72	1	0.17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0.05
37	1	0.72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0.03
38	4	2.90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0.10
39	0	0	1	0.17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0.03
40	1	0.72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0.03
41	1	0.72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0.03
42	2	1.45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0.05
43	2	1.45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0.05
44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00
≥45	14	10.14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0.36
Total	138		594		1990		251		426		390		82		6		25		5		3907
(%)	3.53		15.20		50.93		6.42		10.90		9.98		2.10		0.15		0.64		0.13		100.00