Table of Contents
International Journal of Plant Genomics
Volume 2008, Article ID 412875, 7 pages
http://dx.doi.org/10.1155/2008/412875
Research Article

TreeGenes: A Forest Tree Genome Database

1Department of Plant Sciences, University of California, Davis, CA 95616, USA
2Department of Evolution and Ecology, University of California, Davis, CA 95616, USA

Received 17 December 2007; Revised 13 June 2008; Accepted 11 July 2008

Academic Editor: Shizhong Xu

Copyright © 2008 Jill L. Wegrzyn et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Abstract

The Dendrome Project and associated TreeGenes database serve the forest genetics research community through a curated and integrated web-based relational database. The research community is composed of approximately 2 000 members representing over 730 organizations worldwide. The database itself is composed of a wide range of genetic data from many forest trees with focused efforts on commercially important members of the Pinaceae family. The primary data types curated include species, publications, tree and DNA extraction information, genetic maps, molecular markers, ESTs, genotypic, and phenotypic data. There are currently ten main search modules or user access points within this PostgreSQL database. These access points allow users to navigate logically through the related data types. The goals of the Dendrome Project are to (1) provide a comprehensive resource for forest tree genomics data to facilitate gene discovery in related species, (2) develop interfaces that encourage the submission and integration of all genomic data, and to (3) centralize and distribute existing and novel online tools for the research community that both support and ease analysis. Recent developments have focused on increasing data content, functional annotations, data retrieval, and visualization tools. TreeGenes was developed to provide a centralized web resource with analysis and visualization tools to support data storage and exchange.