Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene

Table 2

Additional links for pathways databases on the internet.

Database name	Description	URL
PathDB	Biochemical pathways, compounds and metabolism	http://www.ncgr.org/pathdb
UM-BBD	University of Minnesota biocatalysis and biodegradation database	http://umbbd.ahc.umn.edu/
BIND	Biomolecular interaction network database	http://www.bind.ca/
BRITE	Biomolecular relations in information transmission and expression, part of KEGG	http://www.genome.ad.jp/brite/
PAJEK	Program for large network analysis	http://vlado.fmf.uni-lj.si/pub/networks/pajek/
DDIB	Database of domain interactions and binding	http://www.ddib.org/
DIP	Database of interacting proteins: experimentally determined protein-protein interactions	http://dip.doe-mbi.ucla.edu/
IntAct project	Protein-protein interaction data	http://www.ebi.ac.uk/intact/
InterDom	Putative protein domain interactions	http://interdom.i2r.a-star.edu.sg/
PSIbase	Interaction of proteins with known 3D structures
Reactome	A knowledgebase of biological pathways	http://www.reactome.org/
STRING	Predicted functional associations between proteins	http://string.embl.de/
TRANSPATH	Gene regulatory networks and microarray analysis	http://www.biobase-international.com/pages/index.php?id=transpathdatabases