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International Journal of Plant Genomics
Table of Contents
Special Issues
International Journal of Plant Genomics
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2008
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Article
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Tab 2
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Review Article
Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene
Table 2
Additional links for pathways databases on the internet.
Database name
Description
URL
PathDB
Biochemical pathways, compounds and metabolism
http://www.ncgr.org/pathdb
UM-BBD
University of Minnesota biocatalysis and biodegradation database
http://umbbd.ahc.umn.edu/
BIND
Biomolecular interaction network database
http://www.bind.ca/
BRITE
Biomolecular relations in information transmission and expression, part of KEGG
http://www.genome.ad.jp/brite/
PAJEK
Program for large network analysis
http://vlado.fmf.uni-lj.si/pub/networks/pajek/
DDIB
Database of domain interactions and binding
http://www.ddib.org/
DIP
Database of interacting proteins: experimentally determined protein-protein interactions
http://dip.doe-mbi.ucla.edu/
IntAct project
Protein-protein interaction data
http://www.ebi.ac.uk/intact/
InterDom
Putative protein domain interactions
http://interdom.i2r.a-star.edu.sg/
PSIbase
Interaction of proteins with known 3D structures
Reactome
A knowledgebase of biological pathways
http://www.reactome.org/
STRING
Predicted functional associations between proteins
http://string.embl.de/
TRANSPATH
Gene regulatory networks and microarray analysis
http://www.biobase-international.com/pages/index.php?id=transpathdatabases