Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene

Table 3

Databases for transcription factors available on the internet.

Databse name	Description	URL
ACTIVITY	Functional DNA/RNA site activity	http://wwwmgs.bionet.nsc.ru/mgs/systems/activity/
DoOP	Database of orthologous promoters: chordates and plants	http://doop.abc.hu/
EPD	Eukaryotic promoter database	http://www.epd.isb-sib.ch/
JASPAR	PSSMs for transcription factor DNA-binding sites	http://jaspar.cgb.ki.se/
MAPPER	Putative transcription factor binding sites in various genomes	http://bio.chip.org/mapper
TESS	Transcription element search system	http://www.cbil.upenn.edu/tess/
TRANSCompel	Composite regulatory elements affecting gene transcription in eukaryotes	http://www.gene-regulation.com/pub/databases.html#transcompel
TRED	Transcriptional regulatory element database	http://rulai.cshl.edu/tred/
TRRD	Transcription regulatory regions of eukaryotic genes	http://www.bionet.nsc.ru/trrd/
AthaMap	Genome-wide map of putative transcription factor binding sites in Arabidopsis thaliana	http://www.athamap.de/
DATF	Database of Arabidopsis transcription factors	http://datf.cbi.pku.edu.cn/