Table of Contents
International Journal of Plant Genomics
Volume 2009, Article ID 539402, 8 pages
http://dx.doi.org/10.1155/2009/539402
Research Article

Structural Characterization and Expression Analysis of the SERK/SERL Gene Family in Rice (Oryza sativa)

Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India

Received 7 November 2008; Accepted 17 June 2009

Academic Editor: Silvana Grandillo

Copyright © 2009 Bhumica Singla et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. S.-H. Shiu and A. B. Bleecker, “Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases,” Proceedings of the National Academy of Sciences of the United States of America, vol. 98, no. 19, pp. 10763–10768, 2001. View at Publisher · View at Google Scholar
  2. S. Baudino, S. Hansen, R. Brettschneider et al., “Molecular characterisation of two novel maize LRR receptor-like kinases, which belong to the SERK gene family,” Planta, vol. 213, no. 1, pp. 1–10, 2001. View at Publisher · View at Google Scholar
  3. V. Hecht, J.-P. Vielle-Calzada, M. V. Hartog et al., “The Arabidopsis somatic embryogenesis receptor kinase 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in cultures,” Plant Physiology, vol. 127, no. 3, pp. 803–816, 2001. View at Publisher · View at Google Scholar
  4. S. Vij, V. Gupta, D. Kumar et al., “Decoding the rice genome,” BioEssays, vol. 28, no. 4, pp. 421–432, 2006. View at Publisher · View at Google Scholar
  5. L. G. Clark, W. Zhang, and J. F. Wendel, “A phylogeny of the grass family (Poaceae) based on ndhF sequence data,” Systematic Botany, vol. 20, no. 4, pp. 436–460, 1995. View at Google Scholar
  6. H. Hu, L. Xiong, and Y. Yang, “Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection,” Planta, vol. 222, no. 1, pp. 107–117, 2005. View at Publisher · View at Google Scholar
  7. Y. Ito, K. Takaya, and N. Kurata, “Expression of SERK family receptor-like protein kinase genes in rice,” Biochimica et Biophysica Acta, vol. 1730, no. 3, pp. 253–258, 2005. View at Publisher · View at Google Scholar
  8. D. Song, G. Li, F. Song, and Z. Zheng, “Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice,” Molecular Biology Reports, vol. 35, no. 2, pp. 275–283, 2008. View at Publisher · View at Google Scholar
  9. S. F. Altschul, T. L. Madden, A. A. Schäffer et al., “Gapped BLAST and PSI-BLAST: a new generation of protein database search programs,” Nucleic Acids Research, vol. 25, no. 17, pp. 3389–3402, 1997. View at Publisher · View at Google Scholar
  10. J. D. Thompson, T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins, “The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools,” Nucleic Acids Research, vol. 25, no. 24, pp. 4876–4882, 1997. View at Publisher · View at Google Scholar
  11. Y. Hiei, S. Ohta, T. Komari, and T. Kumashiro, “Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA,” Plant Journal, vol. 6, no. 2, pp. 271–282, 1994. View at Google Scholar
  12. B. Singla, A. Chugh, J. P. Khurana, and P. Khurana, “An early auxin-responsive Aux/IAA gene from wheat (Triticum aestivum) is induced by epibrassinolide and differentially regulated by light and calcium,” Journal of Experimental Botany, vol. 57, no. 15, pp. 4059–4070, 2006. View at Publisher · View at Google Scholar
  13. C. Thomas, D. Meyer, C. Himber, and A. Steinmetz, “Spatial expression of a sunflower SERK gene during induction of somatic embryogenesis and shoot organogenesis,” Plant Physiology and Biochemistry, vol. 42, no. 1, pp. 35–42, 2004. View at Publisher · View at Google Scholar
  14. E. Albertini, G. Marconi, L. Reale et al., “SERK and APOSTART. Candidate genes for apomixis in Poa pratensis,” Plant Physiology, vol. 138, no. 4, pp. 2185–2199, 2005. View at Publisher · View at Google Scholar
  15. B. Singla, J. P. Khurana, and P. Khurana, “Characterization of three somatic embryogenesis receptor kinase genes from wheat, Triticum aestivum,” Plant Cell Reports, vol. 27, no. 5, pp. 833–843, 2008. View at Publisher · View at Google Scholar
  16. D. M. Braun and J. C. Walker, “Plant transmembrane receptors: new pieces in the signaling puzzle,” Trends in Biochemical Sciences, vol. 21, no. 2, pp. 70–73, 1996. View at Publisher · View at Google Scholar
  17. W. J. Fantl, D. E. Johnson, and L. T. Williams, “Signalling by receptor tyrosine kinases,” Annual Review of Biochemistry, vol. 62, pp. 453–481, 1993. View at Google Scholar
  18. K. Shah, T. W. J. Gadella Jr., H. van Erp, V. Hecht, and S. C. de Vries, “Subcellular localization and oligomerization of the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 protein,” Journal of Molecular Biology, vol. 309, no. 3, pp. 641–655, 2001. View at Google Scholar
  19. J.-I. Itoh, K.-I. Nonomura, K. Ikeda et al., “Rice plant development: from zygote to spikelet,” Plant and Cell Physiology, vol. 46, no. 1, pp. 23–47, 2005. View at Publisher · View at Google Scholar
  20. G. Jurgens and U. Mayer, “Arabidopsis,” in Embryos. Color Atlas of Development, J. B. L. Bard, Ed., pp. 7–21, Wolf Publishers, London, UK, 1994. View at Google Scholar
  21. T. Shimada, T. Hirabayashi, T. Endo, H. Fujii, M. Kita, and M. Omura, “Isolation and characterization of the somatic embryogenesis receptor-like kinase gene homologue (CitSERK1) from Citrus unshiu Marc,” Scientia Horticulturae, vol. 103, no. 2, pp. 233–238, 2005. View at Publisher · View at Google Scholar
  22. A. Feher, T. P. Pasternak, and D. Dudits, “Transition of somatic plant cells to an embryogenic state,” Plant Cell, Tissue and Organ Culture, vol. 74, no. 3, pp. 201–228, 2003. View at Publisher · View at Google Scholar
  23. M. Quint and W. M. Gray, “Auxin signaling,” Current Opinion in Plant Biology, vol. 9, no. 5, pp. 448–453, 2006. View at Publisher · View at Google Scholar
  24. K. E. Nolan, R. R. Irwanto, and R. J. Rose, “Auxin up-regulates MtSERK1 expression in both Medicago truncatula root-forming and embryogenic cultures,” Plant Physiology, vol. 133, no. 1, pp. 218–230, 2003. View at Publisher · View at Google Scholar
  25. M. de Oliveira Santos, E. Romano, K. S. C. Yotoko, M. L. P. Tinoco, B. B. A. Dias, and F. J. L. Aragão, “Characterisation of the cacao somatic embryogenesis receptor-like kinase (SERK) gene expressed during somatic embryogenesis,” Plant Science, vol. 168, no. 3, pp. 723–729, 2005. View at Publisher · View at Google Scholar
  26. N. B. Mandava, “Plant growth-promoting brassinosteroids,” Annual Review of Plant Physiology and Plant Molecular Biology, vol. 39, pp. 23–52, 1988. View at Google Scholar
  27. F. Bao, J. Shen, S. R. Brady, G. K. Muday, T. Asami, and Z. Yang, “Brassinosteroids interact with auxin to promote lateral root development in Arabidopsis,” Plant Physiology, vol. 134, no. 4, pp. 1624–1631, 2004. View at Publisher · View at Google Scholar
  28. A. Nakamura, N. Nakajima, H. Goda et al., “Arabidopsis Aux/IAA genes are involved in brassinosteroid-mediated growth responses in a manner dependent on organ type,” Plant Journal, vol. 45, no. 2, pp. 193–205, 2006. View at Publisher · View at Google Scholar
  29. B. Singla, A. K. Tyagi, J. P. Khurana, and P. Khurana, “Analysis of expression profile of selected genes expressed during auxin-induced somatic embryogenesis in leaf base system of wheat (Triticum aestivum) and their possible interactions,” Plant Molecular Biology, vol. 65, no. 5, pp. 677–692, 2007. View at Publisher · View at Google Scholar
  30. A. Nakamura, K. Higuchi, H. Goda et al., “Brassinolide induces IAA5, IAA19, and DR5, a synthetic auxin response element in Arabidopsis, implying a cross talk point of brassinosteroid and auxin signaling,” Plant Physiology, vol. 133, no. 4, pp. 1843–1853, 2003. View at Publisher · View at Google Scholar
  31. A. Sakurai, T. Yokota, and S. D. Clouse, “Physiological actions of brassinosteroids,” in Brassinosteroids: Steroidal Plant Hormones, pp. 137–161, Springer, Tokyo, Japan, 1999. View at Google Scholar
  32. K. J. Halliday, “Plant hormones: the interplay of brassinosteroids and auxin,” Current Biology, vol. 14, no. 23, pp. R1008–R1010, 2004. View at Publisher · View at Google Scholar
  33. K. Mockaitis and M. Estelle, “Integrating transcriptional controls for plant cell expansion,” Genome Biology, vol. 5, no. 11, article 245, 2004. View at Publisher · View at Google Scholar
  34. E. Russinova, J.-W. Borst, M. Kwaaitaal et al., “Heterodimerization and endocytosis of Arabidopsis brassinosteroid receptors BRI1 and AtSERK3 (BAK1),” Plant Cell, vol. 16, no. 12, pp. 3216–3229, 2004. View at Publisher · View at Google Scholar
  35. R. Karlova, S. Boeren, E. Russinova, J. Aker, J. Vervoort, and S. de Vries, “The Arabidopsis somatic embryogenesis receptor-like kinase1 protein complex includes brassinosteroid-insensitive 1,” Plant Cell, vol. 18, no. 3, pp. 626–638, 2006. View at Publisher · View at Google Scholar