Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms

Table 2

Possible genome rearrangement events observed in the Micro-Tom and “Heinz 1706” genome.

No.

BAC

End1

Acc

Chr

Direction

From

To

End2

Acc

Chr

Direction

From

To

Possible event

1

MTBAC102D20

T7

FT290741

SL2.40ch02

—

29,374,874

29,375,640

SP6

FT290742

SL2.40ch02

—

29,494,209

29,494,781

Inversion

1

MTBAC084K15

T7

FT278701

SL2.40ch02

—

29,375,421

29,376,188

SP6

FT278702

SL2.40ch02

—

29,462,866

29,463,675

2

MTBAC041L05

T7

FT251747

SL2.40ch03

—

6,601,537

6,602,368

SP6

FT251748

SL2.40ch03

—

55,664,754

55,665,559

Translocation and Inversion

2

MTBAC077O14

SP6

FT274148

SL2.40ch03

—

6,602,568

6,603,163

T7

FT274147

SL2.40ch03

—

55,665,296

55,666,020