Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms

Table 3

Number of polymorphisms found in each chromosome.

		SL2.40ch01	SL2.40ch02	SL2.40ch03	SL2.40ch04	SL2.40ch05	SL2.40ch06	SL2.40ch07	SL2.40ch08	SL2.40ch09	SL2.40ch10	SL2.40ch11	SL2.40ch12	Total
Euchromatin	no. of polymorphisms	4,152	4,123	3,700	2,863	969	2,417	3,504	2,113	1,932	1,302	1,694	2,161	30,930
Euchromatin	Covered bases	17,310,734	14,644,412	11,678,941	6,261,540	5,377,576	10,621,719	8,336,310	9,541,847	6,047,365	5,473,701	6,855,876	8,119,058	110,269,079
Euchromatin	kb/polymorphism	4,169	3,552	3,156	2,187	5,550	4,395	2,379	4,516	3,130	4,204	4,047	3,757	3,565
Heterochromatin	no. of polymorphisms	12,319	10,694	10,408	9,995	30,951	5,134	8,347	8,562	10,231	9,209	14,937	10,075	140,862
Heterochromatin	Covered bases	39,941,033	15,405,507	32,458,031	34,993,238	31,099,727	19,672,865	35,988,229	33,980,702	40,376,427	37,964,128	27,534,109	36,150,348	385,564,344
Heterochromatin	kb/polymorphism	3,242	1,441	3,119	3,501	1,005	3,832	4,312	3,969	3,946	4,123	1,843	3,588	2,737
Total	no. of polymorphisms	16,471	14,817	14,108	12,858	31,920	7,551	11,851	10,675	12,163	10,511	16,631	12,236	171,792
Total	Covered bases	57,251,767	30,049,919	44,136,972	41,254,778	36,477,303	30,294,584	44,324,539	43,522,549	46,423,792	43,437,829	34,389,985	44,269,406	495,833,423
Total	kb/polymorphism	3,476	2,028	3,129	3,208	1,143	4,012	3,740	4,077	3,817	4,133	2,068	3,618	2,886