Table 1: Illumina reads and alignment to apple gene models.

Biological replicatesNumber of fastq sequencesOverall alignment rate (percentage)

B.9-1.fastq2832738844.61
B.9-2.fastq3335625249.23
B.9-3.fastq2579080952.76

G.935-1.fastq2646974147.64
G.935-2.fastq1835470951.71
G.935-3.fastq2335934346.89