A Protein Sequence Analysis Hardware Accelerator Based on Divergences

Table 1

Emission scores of amino acids for match and insert states of profile HMM of Figure 2.

State	A	C	D	E	F, I, L, M, V, W	G, K, P, S	H, Q, R, T	Y
M1	7	−1	−1	1	−1	2	1	−1
M2	−1	9	−1	1	−1	2	1	−1
M3	−1	−1	8	2	−1	2	1	−1
M4	−1	−1	3	9	−1	2	1	−1
I1	−1	−1	0	1	−1	0	1	2
I2	−1	−1	0	1	−1	0	1	2
I3	−1	−1	0	1	−1	0	1	2