Hybrid-Controlled Neurofuzzy Networks Analysis Resulting in Genetic Regulatory Networks Reconstruction

Table 10

Comparison of our algorithm performance by other methods in literature in detecting interactions among experimentally known gene interactions.

No	Interactions	DBN [57]	VBEM [58]	Time delay-ARACNE [59]	PF subjected to LASSO [30]	Propose Algorithm
1	CLN03 → SWI04	Consistent	Consistent	Consistent	Not Found	Consistent
2	CLN03 → SWI06	Not Found	Not Found	Consistent	Inconsistent	Not Found
3	CLN03 → MBP01	Not Found	Not Found	Consistent	Not Found	Not Found
4	CDC28 → MBP01	Not Found	Consistent	Consistent	Not Found	Consistent
5	CDC28 → SWI04	Not Found	Not Found	Not Found	Not Found	Consistent
6	CDC28 → SWI06	Not Found	Not Found	Consistent	Inconsistent	Not Found
7	CDC28 → CDC06	Not Found	Consistent	Not Found	Not Found	Not Found
8	CDC28 ⊸ SIC01	Not Found	Not Found	Not Found	Not Found	Not Found
9	SWI04 → CLN01	Consistent	Consistent	Consistent	Not Found	Not Found
10	SWI04 → CLN02	Consistent	Not Found	Not Found	Not Found	Not Found
11	SWI04 → CDC28	Not Found	Not Found	Not Found	Not Found	Not Found
12	SWI06 → CLB05	Not Found	Not Found	Not Found	Consistent	Consistent
13	SWI06 → CLB06	Not Found	Consistent	Consistent	Not Found	Consistent
14	SWI06 → CLN1	Inconsistent	Inconsistent	Consistent	Consistent	Inconsistent
15	SWI06 → CLN2	Not Found	Not Found	Not Found	Consistent	Consistent
16	SWI06 → CDC28	Not Found	Not Found	Not Found	Not Found	Consistent
17	MBP01 → CLB05	Not Found	Not Found	Not Found	Not Found	Not Found
18	MBP01 → CLB06	Not Found	Not Found	Not Found	Not Found	Consistent
19	MBP01 → CDC28	Not Found	Not Found	Not Found	Not Found	Not Found
20	CLN01 → SWI06	Not Found	Not Found	Not Found	Consistent	Consistent
21	CLN01 → SWI04	Not Found	Not Found	Not Found	Not Found	Consistent
22	CLN01 ⊸ SIC01	Consistent	Inconsistent	Inconsistent	Consistent	Inconsistent
23	CLN02 ⊸ SIC01	Not Found	Not Found	Inconsistent	Not Found	Not Found
24	CLN02 → SWI04	Not Found	Not Found	Consistent	Not Found	Consistent
25	CLN02 → SWI06	Not Found	Not Found	Not Found	Consistent	Not Found
26	SIC01 ⊸ CDC28	Not Found	Not Found	Not Found	Inconsistent	Not Found
27	SIC01 ⊸ CLB05	Not Found	Not Found	Not Found	Not Found	Not Found
28	SIC01 ⊸ CLB06	Not Found	Not Found	Not Found	Not Found	Not Found
29	CDC20 ⊸ CLB05	Not Found	Not Found	Not Found	Not Found	Consistent
30	CDC20 ⊸ CLB06	Not Found	Not Found	Not Found	Not Found	Inconsistent
31	CDC20 ⊸ CDC28	Not Found	Not Found	Not Found	Consistent	Consistent
32	CLB05 → CDC06	Not Found	Not Found	Not Found	Not Found	Not Found
33	CLB06 → CDC06	Not Found	Inconsistent	Consistent	Not Found	Not Found

*Symbols “→” and “⊸” illustrate activator and repressor interactions, respectively.