Research Article
Electric LAMP: Virtual Loop-Mediated Isothermal AMPlification
Table 1
eLAMP amplification, using two primer sets, of the gltA/gltB region from 40 complete Staphylococcus genomes (0 = no amplification; 1 = amplification).
| | Species | GenBank accession | Exact matching | Approximate matching | | LAVA | PrimerExplorer | LAVA | PrimerExplorer |
| | S. aureus | AJ938182.1 | 1 | 1 | 1 | 1 | | S. aureus | AM990992.1 | 1 | 1 | 1 | 1 | | S. aureus | AP009324.1 | 1 | 1 | 1 | 1 | | S. aureus | AP009351.1 | 1 | 1 | 1 | 1 | | S. aureus | BA000017.4 | 1 | 1 | 1 | 1 | | S. aureus | BA000018.3 | 1 | 1 | 1 | 1 | | S. aureus | BA000033.2 | 1 | 1 | 1 | 1 | | S. aureus | BX571856.1 | 1 | 1 | 1 | 1 | | S. aureus | BX571857.1 | 1 | 1 | 1 | 1 | | S. aureus | CP000046.1 | 1 | 1 | 1 | 1 | | S. aureus | CP000253.1 | 1 | 1 | 1 | 1 | | S. aureus | CP000255.1 | 1 | 1 | 1 | 1 | | S. aureus | CP000703.1 | 1 | 1 | 1 | 1 | | S. aureus | CP000730.1 | 1 | 1 | 1 | 1 | | S. aureus | CP000736.1 | 1 | 1 | 1 | 1 | | S. aureus | CP001781.1 | 1 | 1 | 1 | 1 | | S. aureus | CP001844.2 | 1 | 1 | 1 | 1 | | S. aureus | CP001996.1 | 0 | 0 | 1 | 1 | | S. aureus | CP002110.1 | 1 | 1 | 1 | 1 | | S. aureus | CP002114.2 | 1 | 1 | 1 | 1 | | S. aureus | CP002120.1 | 1 | 1 | 1 | 1 | | S. aureus | CP002643.1 | 1 | 1 | 1 | 1 | | S. aureus | CP003033.1 | 1 | 1 | 1 | 1 | | S. aureus | CP003045.1 | 1 | 1 | 1 | 1 | | S. aureus | CP003166.1 | 0 | 1 | 0 | 1 | | S. aureus | CP003194.1 | 0 | 0 | 1 | 0 | | S. aureus | FN433596.1 | 1 | 1 | 1 | 1 | | S. aureus | FR714927.1 | 1 | 1 | 1 | 1 | | S. aureus | FR821777.2 | 0 | 0 | 0 | 0 | | S. aureus | FR821779.1 | 0 | 0 | 1 | 1 | | S. aureus | HE681097.1 | 0 | 0 | 1 | 1 | | S. carnosus | AM295250.1 | 0 | 0 | 0 | 0 | | S. epidermidis | AE015929.1 | 0 | 0 | 0 | 0 | | S. epidermidis | CP000029.1 | 0 | 0 | 0 | 0 | | S. haemolyticus | AP006716.1 | 0 | 0 | 0 | 0 | | S. lugdunensis | CP001837.1 | 0 | 0 | 0 | 0 | | S. lugdunensis | FR870271.1 | 0 | 0 | 0 | 0 | | S. pseudintermedius | CP002439.1 | 0 | 0 | 0 | 0 | | S. pseudintermedius | CP002478.1 | 0 | 0 | 0 | 0 | | S. saprophyticus | AP008934.1 | 0 | 0 | 0 | 0 |
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