Research Article
Differential Expression Analysis for RNA-Seq Data
Table 1
Assessing variability across replicates using the likelihood ratio test on 17708 genes.
| | No. of replicates | | | |
Percentage (number) of genes with similar count at
different levels | | 1% | 2.5% | 5% | 10% |
| | 2 | 98.8 (17506) | 97.5 (17282) | 94.7 (16782) | 89.2 (15809) | | 3 | 98.4 (17425) | 96.6 (17111) | 93.9 (16637) | 88.5 (15674) | | 4 | 97.1 (17202) | 94.8 (16795) | 91.5 (16209) | 85.8 (15197) | | 5 | 96.2 (17037) | 93.5 (16563) | 90.1 (15970) | 84.0 (14876) |
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