Research Article

HMEC: A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction

Table 5

Reconstruction rate and running time of HapCUT and HMEC with 35% coverage on HuRef data.

Error rate HapCUT HMEC
Reconstruction rate Time (sec)Reconstruction rate Time (sec)

10 0.988 181.025 1.000 0.158
15 0.988 132.434 1.000 0.127
20 0.988 231.989 0.999 0.105
25 0.987 210.040 0.998 0.101
30 0.988 217.292 0.996 0.102
40 0.987 215.533 0.995 0.100