International Scholarly Research Notices / 2013 / Article / Tab 4

Research Article

Complete Mitogenomes of Euploea mulciber (Nymphalidae: Danainae) and Libythea celtis (Nymphalidae: Libytheinae) and Their Phylogenetic Implications

Table 4

Codon usage of the protein-coding genes of the Libythea celtis and Euploea mulciber mitogenomes.

Codon (RSCU)

UUU(F)360 (1.88)/346 (1.89)
UUC(F)23 (0.12)/21 (0.11)
UUA(L)489 (5.37)/483 (5.35)
UUG(L)5 (0.05)/8 (0.09)
CUU(L)35 (0.38)/34 (0.38)
CUC(L)1 (0.01)/3 (0.03)
CUA(L)16 (0.18)/14 (0.15)
CUG(L)0 (0)/0 (0)
AUU(I)425 (1.95)/436 (1.91)
AUC(I)11 (0.05)/21 (0.09)
AUA(M)276 (1.94)/287 (1.93)
AUG(M)9 (0.06)/10 (0.07)
GUU(V)69 (1.99)/63 (1.98)
GUC(V)2 (0.06)/1 (0.03)
GUA(V)65 (1.87)/62 (1.95)
GUG(V)3 (0.09)/1 (0.03)
UCU(S)120 (2.94)/97 (2.45)
UCC(S)7 (0.17)/8 (0.2)
UCA(S)83 (2.03)/94 (2.37)
UCG(S)1 (0.02)/5 (0.13)
CCU(P)73 (2.39)/77 (2.52)
CCC(P)9 (0.3)/10 (0.33)
CCA(P)39 (1.28)/35 (1.15)
CCG(P)1 (0.03)/0 (0)
ACU(T)84 (2.15)/92 (2.36)
ACC(T)2 (0.05)/7 (0.18)
ACA(T)70 (1.79)/53 (1.36)
ACG(T)0 (0)/4 (0.1)
GCU(A)70 (2.28)/75 (2.36)
GCC(A)6 (0.2)/1 (0.03)
GCA(A)46 (1.5)/49 (1.54)
GCG(A)1 (0.03)/2 (0.06)
UAU(Y)173 (1.9)/18 (1.94)
UAC(Y)9 (0.1)/6 (0.06)
UAA(*)0 (0)/0 (0)
UAG(*)0 (0)/0 (0)
CAU(H)59 (1.79)/60 (1.79)
CAC(H)7 (0.21)/7 (0.21)
CAA(Q)61 (1.91)/56 (1.9)
CAG(Q)3 (0.09)/3 (0.1)
AAU(N)250 (1.91)/24 (1.91)
AAC(N)12 (0.09)/11 (0.09)
AAA(K)93 (1.81)/99 (1.96)
AAG(K)10 (0.19)/2 (0.04)
GAU(D)69 (1.97)/58 (1.9)
GAC(D)1 (0.03)/3 (0.1)
GAA(E)60 (1.76)/68 (1.89)
GAG(E)8 (0.24)/4 (0.11)
UGU(C)26 (1.73)/28 (1.65)
UGC(C)4 (0.27)/6 (0.35)
UGA(W)93 (1.96)/92 (1.98)
UGG(W)2 (0.04)/1 (0.02)
CGU(R)10 (0.77)/14 (1.1)
CGC(R)1 (0.08)/1 (0.08)
CGA(R)39 (3)/36 (2.82)
CGG(R)2 (0.15)/0 (0)
AGU(S)32 (0.78)/29 (0.73)
AGC(S)3 (0.07)/2 (0.05)
AGA(S)81 (1.98)/81 (2.04)
AGG(S)0 (0)/1 (0.03)
GGU(G)50 (1)/55 (1.13)
GGC(G)0 (0)/2 (0.04)
GGA(G)126 (2.52)/120 (2.47)
GGG(G)24 (0.48)/17 (0.35)

: frequency of codon used; RSCU: relative synonymous codon usage; *stop codon.
Start codons and stop codons were excluded in total codon counts.