Antimicrobial Resistance of Salmonella enterica Isolates from Tonsil and Jejunum with Lymph Node Tissues of Slaughtered Swine in Metro Manila, Philippines
Table 1
Sequence similarities (%) of isolates and reference Salmonella enterica sequences obtained from GenBank.
Isolate
Region
Serogroup
Strain
Accession number
Query length and cover, value
% Maximum identity
Lt16
rfbJ
B
Salmonella enterica subsp. enterica serotype Typhimurium str. U288
CP003836.1
677, 97%, 0.0
99%
Lt21
rfbJ
B
Salmonella enterica subsp. enterica serotype Typhimurium str. U288
CP003836.1
671, 98%, 0.0
99%
Lt24
rfbJ
B
Salmonella enterica subsp. enterica serotype Typhimurium str. U288
CP003836.1
653, 99%, 0.0
99%
Lt30
rfbJ
B
Salmonella enterica subsp. enterica serotype Typhimurium str. U288
CP003836.1
686, 95%, 0.0
99%
Lai1
rfbJ
B
Salmonella enterica subsp. enterica serotype Agona str. SL483
CP001138.1
674, 98%, 0.0
99%
Lai27
rfbJ
B
Salmonella enterica subsp. enterica serotype Typhimurium str. U288
CP003836.1
672, 95%, 0.0
99%
Lat23
rfbJ
B
Salmonella enterica subsp. enterica serotype Agona str. SL483
CP001138.1
678, 97%, 0.0
99%
Lat27
rfbJ
B
Salmonella enterica subsp. enterica serotype Agona str. SL483
CP001138.1
665, 97%, 0.0
99%
Lbt30
rfbJ
B
Salmonella enterica subsp. enterica serotype Typhimurium str. U288
CP003836.1
684, 97%, 0.0
99%
Lct47
rfbJ
B
Salmonella enterica subsp. enterica serotype Typhimurium str. U288
CP003836.1
674, 93%, 0.0
100%
Nt4
rfbJ
B
Salmonella enterica subsp. enterica serotype Typhimurium str. U288
CP003836.1
684, 94%, 0.0
99%
Pt26
rfbJ
B
Salmonella enterica subsp. enterica serotype Heidelberg str. B182
CP001120.1
662, 98%, 0.0
99%
Lat20
wzxC1
C1
Salmonella enterica subsp. enterica serotype Choleraesuis str. SC-B67
AE017220.1
490, 99%, 0.0
99%
Lbt18
wzxC1
C1
Salmonella enterica subsp. enterica serotype Choleraesuis str. SC-B67
AE017220.1
487, 99%, 0.0
99%
Lt25
tyv
D
Salmonella enterica subsp. enterica serotype Enteritidis str. P125109
AM933172.1
619, 99%, 0.0
99%
Li16
wzxE1
E
Salmonella enterica subsp. enterica serotype Weltevreden str. 2007-60-3289-1
FR775224.1
344, 100%,
99%
Lt3
wzxE1
E
Salmonella enterica subsp. enterica serotype Weltevreden str. 2007-60-3289-1
FR775224.1
357, 69%,
98%
Mbi8
wzxE1
E
Salmonella enterica subsp. enterica serotype Weltevreden str. 2007-60-3289-1
FR775224.1
354, 99%,
98%
Mbi25
wzxE1
E
Salmonella enterica subsp. enterica serotype Weltevreden str. 2007-60-3289-1
FR775224.1
348, 99%,
100%
Pt12
wzxE1
E
Salmonella enterica subsp. enterica serotype Weltevreden str. 2007-60-3289-1
