Mitochondrial DNA Haplogroups and Susceptibility to Prostate Cancer in a Colombian Population

Table 2

Variable nucleotide positions for the HVS1 mtDNA sequences obtained and their frequency in cases and control groups.

Control				Cases
Hap	Haplogroup	𝑛	HSV-1 (16000+)	Hap	Haplogroup	𝑛	HSV-1 (16000+)
1	H	3	CRS	1	H	3	CRS
2	H	1	271, 304	2	H	1	188G
3	H	1	243, 311	3	H	1	230, 256, 352
4	H	1	189	4	H	1	129, 316
5	H	1	189, 223	5	H	1	129, 257, 316
				6	H	1	244, 295
				7	J	1	069, 126
				8	J	1	069, 126, 278
6	HV	1	278, 311	9	HV	1	134, 362
7	K	1	224, 311	10	HV	2	362
8	U1b	1	104, 111, 249, 327	11	M1	1	129, 183C, 189, 311
9	U2e	1	051, 126C, 183C, 189, 362	12	T	1	126, 163, 186, 189N, 294
				13	T	1	126, 292, 294
				14	T	1	111, 126, 294, 304
10	U5a	1	192, 270	15	U5a	1	192, 270
				16	U5a	1	192, 256, 270
				17	U5b	1	189, 192, 243, 270, 311, 336
				18	U6a	1	172, 183C, 189, 219, 278, 295
				19	L0a1	1	129, 148, 168, 172, 187, 188G, 189, 214, 223, 230, 278, 293, 311, 320
				20	L1c1a	1	129, 187, 189, 223, 274, 278, 293, 294, 311, 360
11	L2d2	1	093, 111A, 145, 184, 223, 239, 278, 292, 355, 362	21	L2a	1	131, 189, 223, 225, 234, 278, 294, 309
				22	L2a	1	093, 189, 192, 223, 278, 294, 309
				23	L2a	1	189, 223, 230, 278, 294
				24	L2b1	1	114A, 129, 213, 223, 278, 354
				25	L2c	1	223, 278
12	L3b1	1	124, 223, 234, 278, 362	26	L3e1	1	189, 207, 223, 327
				27	L3e1a	1	185, 209, 223, 327
				28	L3d	1	111, 124, 223
13	L3f	1	189, 209, 223, 292, 311	29	L3f	1	209, 223, 292, 295, 311
14	B2	1	182C, 183C, 189, 217	30	B2	1	086, 182C, 183C, 189, 217
15	B2	1	086, 182C, 183C, 189, 217	31	B2	1	182C, 183C, 189, 217, 301, 304
16	B2	1	129, 183C, 189, 217, 283C	32	B2	2	182C, 183C, 189, 217, 234, 362
17	B2	1	183C, 189, 217, 261, 284	33	B2	6	182C, 183C, 189, 217
18	B2	1	183C, 189, 217, 266	34	B2	1	097, 098, 182C, 183C, 189, 217
19	B2	1	183C, 189, 217, 274	35	B2	1	097, 098, 183C, 189, 217
20	B2	1	183C, 189, 217, 324	36	B2	1	182C, 183C, 189, 217, 324
21	B2	1	183C, 189, 217, 278, 355	37	B2	1	183C, 189, 217, 324, 366
22	B2	1	183C, 189, 217, 270, 304	38	B2	1	183C, 189, 217, 324
23	B2	1	183C, 189, 217, 299	39	B2	1	145, 157, 182C, 183C, 189, 217, 294, 311
24	B2	9	183C, 189, 217	40	B2	1	183C, 189, 217, 311
25	B2	3	098, 106, 183C, 189, 217, 362	41	B2	1	183C, 189, 217, 256
26	B2	1	183C, 189, 217, 234, 362	42	B2	1	093, 183C, 189, 217
				43	B2	1	179, 183C, 189, 217
				44	B2	1	183C, 186, 189, 216, 217
				45	B2	15	183C, 189, 217
				46	B2	1	183C, 189, 217, 278
27	C1	1	051, 223, 298, 304, 311, 325, 327	47	C1	1	205G, 223, 298, 325, 327
28	C1	1	051, 223, 298, 325, 327	48	C1	1	223, 265, 298, 319, 325, 327
29	C1	1	051, 209, 223, 298, 325, 327	49	C1	2	155, 223, 298, 325, 327
30	C1	1	169, 223, 298, 325, 327	50	C1	1	223, 298, 325, 327
31	C1	1	192, 223, 298, 325, 327	51	C1	1	051, 172, 223, 298, 325, 327
				52	C1	3	051, 223, 298, 325, 327
				53	C1	1	051, 209, 223, 298, 300, 325, 327
				54	C1	1	051, 209, 223, 298, 325, 327
				55	C1	4	223, 298, 325, 327
				56	C1	1	223, 290, 298, 325, 327
				57	C1	1	086, 223, 298, 325, 327
				58	C1	1	093, 223, 298, 325, 327
				59	C1	1	223, 278, 298, 325, 327
				60	C1	1	223, 259, 298, 325, 327
32	D1	1	183C, 189, 223, 325, 362	61	D1	3	183C, 189, 223, 325, 362
33	D1	1	189, 223, 272, 325, 362	62	D1	1	129, 223, 274, 325, 362
34	D1	1	142, 207, 223, 325, 362	63	D1	1	129, 189, 223, 325, 362
35	D1	1	093, 142, 223, 325, 362	64	D1	1	126, 223, 254, 325, 362
36	D1	2	223, 325, 362	65	D1	1	142, 223, 325, 362
37	D1	1	129, 223, 274, 325, 362	66	D1	3	223, 325, 362
38	A2	2	223, 290, 293T, 319, 362	67	A2	11	223, 290, 319, 362
39	A2	1	223, 290, 319, 362	68	A2	1	092, 111, 223, 290, 319, 356, 362
40	A2	1	223, 258N, 290, 319, 362	69	A2	1	111, 223, 290, 319, 356, 362
41	A2	1	223, 266, 290, 319, 362	70	A2	1	111, 223, 266, 290, 319, 356, 362
42	A2	1	111, 223, 239, 290, 319, 362	71	A2	1	092, 111, 223, 290, 319, 360, 362
43	A2	2	111, 223, 239, 290, 311, 319, 362	72	A2	1	075, 111, 175, 223, 259, 290, 300, 319, 362
44	A2	1	111, 189, 223, 239, 290, 319, 362	73	A2	4	111, 175, 223, 259, 290, 300, 319, 362
45	A2	2	111, 129, 223, 256, 290, 319, 362	74	A2	1	111, 175, 223, 259, 290, 319, 362
46	A2	1	111, 223, 287, 290, 319, 362	75	A2	1	111, 129, 223, 290, 319, 362
47	A2	1	111, 223, 319, 360, 362	76	A2	1	111, 129, 172, 223, 290, 319, 362
48	A2	1	111, 223, 290, 319, 360, 362	77	A2	3	111, 129, 223, 256, 290, 319, 362
49	A2	1	111, 129, 223, 290, 319, 362	78	A2	1	111, 213, 223, 286, 290, 319, 362
50	A2	1	093, 111, 223, 290, 319, 356, 362	79	A2	15	111, 213, 223, 290, 319, 362
51	A2	1	111, 213, 223, 290, 311, 319, 362	80	A2	1	111, 186, 213, 223, 290, 319, 362
52	A2	6	111, 213, 223, 290, 319, 362	81	A2	1	111, 213, 223, 290, 311, 319, 362
53	A2	1	111, 213, 223, 290, 293, 319, 362	82	A2	1	111, 131, 209, 223, 290, 311, 319, 362
54	A2	1	111, 187, 223, 290, 319, 362	83	A2	1	111, 223, 261, 290, 311, 319, 362
55	A2	1	111, 172, 223, 290, 319, 362	84	A2	13	111, 223, 290, 319, 362
56	A2	2	111, 223, 259, 290, 300, 319, 362	85	A2	1	111, 223, 240T, 290, 319, 362
57	A2	1	075, 111, 175, 223, 259, 290, 300, 319, 362	86	A2	1	093, 111, 223, 290, 299, 319, 362
58	A2	1	075, 111, 223, 259, 290, 300, 319, 362	87	A2	2	111, 223, 290, 319, 360, 362
59	A2	10	111, 223, 290, 319, 362	88	A2	1	086, 111, 171, 223, 290, 319, 362
				89	A2	1	111, 223, 290, 292A, 319, 362
				90	A2	2	111, 223, 290, 319, 355, 362
				91	A2	1	111, 197A, 223, 290, 319, 362
				92	A2	1	111, 223, 239, 290, 319, 362