Sequence Variation and Expression of the Gimap Gene Family in the BB Rat
Table 1
Probes and primers used in qRT-PCR.
Primer name
Primer sequence to
Gimap8-f
CCAGGAGACCCAGGTGAAAG
Gimap8-r
AGTTGAATGCTCATCATAGCTCCTT
Gimap8-p
6FAM-TCTGTTGACAATAGCCAATGATCTCA-BHQ1
Gimap9-f
AGGAACGGCAGAGCCTACTTT
Gimap9-r
CCACTAGACATTGGTTCAGCTTCTTA
Gimap9-p
6FAM-CTGACAGGATATATAAGGACA-MGBQ
Gimap4-f
AACATGCCGTACAGAGCTCACA
Gimap4-r
AGTGGCACCATTAGAAGGCAAA
Gimap4-p
6FAM-CCATGACACACCCACTCCAACAGGG-BHQ1
Gimap6-f
TGGATGCTCTGGATGTTGCA
Gimap6-r
TCCTGCTCATCCCCTTGTG
Gimap6-p
6FAM-TTGTTGAAGCCACAATGGCGTCTCTCA-BHQ1
Gimap7-f
GGACTCAGTGTCAGGCTCCAA
Gimap7-r
CGGGAGGACAGGCTAGCATA
Gimap7-p
6FAM-CTGGATCACACTTGGCGCTCAGCTC-BHQ1
Gimap1-f
AGAGGCGGACCAGGTTCCTA
Gimap1-r
CCTCCAGCCCTGCCTGTAG
Gimap1-p
6FAM-TTCTGCCATCTCCACAGCCCA-BHQ1
Gimap5-f
CATGTTAGGGAAGCTCAGTC
Gimap5-r
GAAGGGTTCTACTGTGTCTCA
Gimap5-p
6FAM-TTTCACTATCATTTGACTCCTGTGCA-BHQ1
Gimap3-f
CCACAGGGAGTGTAGACCTTGAA
Gimap3-r
CTGCTGTTTCCGAATCCAGTTT
Gimap3-p
6FAM-ATCCTCCAGCGTCCAC-MGBQ
Lr8-f
GCCTCTGGTTGTGCCTTCTG
Lr8-r
CCCTGTCCCATCTCATGGAT
Lr8-p
6FAM-CCCACTCCAGCCAAAATTGCCACA-BHQ1
Cyc-f
CACCGTGTTCTTCGACAT
Cyc-r
TTTCTGCTGTCTTTGGAACT
Cyc-p
HEX-CTGCTTCGAGCTGTTTGCAGAC-BHQ1
Probes and primers were
designed to bind near the end of the transcripts. f is forward primer, r is reverse primer, p
is probe, 6FAM is 6-carboxyfluorescein, HEX
is hexachlorofluorescein, and BHQ1 is black
hole quencher 1.