Journal of Immunology Research / 2014 / Article / Tab 3 / Research Article
Model for Vaccine Design by Prediction of B-Epitopes of IEDB Given Perturbations in Peptide Sequence, In Vivo Process, Experimental Techniques, and Source or Host Organisms Table 3 Top100 values of p1 for positive perturbations in training series.
New experiment Experiment of reference Input perturbation terms IDE Sequence ho so ip tq IDE Sequence ho so ip tq
115153 MKGVVC Homo sapiens Homo sapiens OAID ELISA 115155 NNQRK Mus musculus Dengue virus 2 AID WI 0.01 0.012 0.004 0.017 0.012 52124 QQQPP Homo sapiens Triticum aestivum OOA ELISA 52128 QQQQGG Homo sapiens Glycine max OOA WI 0 0 −0.018 0 0.002 3639 APLGVT Homo sapiens Hepatitis E virus EWEIR ELISA 3652 APLTRG Homo sapiens Human herpesvirus OOID ELISA 0.04 0.04 0.039 0.043 0.04 135959 LTRAYA Homo sapiens Homo sapiens OAID ELISA 135963 NGQEEK Mus musculus MD AID ELISA −0.04 −0.038 −0.047 −0.033 −0.04 108075 PREPQVY Homo sapiens Homo sapiens OAID ELISA 108078 PTSPSGV Oryctolagus cuniculus Homo sapiens AID ACAbB −0.01 −0.006 −0.01 −0.003 −0.011 25113 HVVDLP Homo sapiens Hepatitis E virus EWEIR ELISA 25126 HWGNH Mus musculus MD AID ELISA 0.02 0.022 0.013 0.023 0.02 48780 PPFSPQ Homo sapiens Hepatitis delta virus OOID ELISA 48782 PPFTSAV Mus musculus MD AID SAC 0.02 0.022 0.008 0.021 0.021 40988 LYVVAYQA Mus musculus Viscum album AID ELISA 41004 MAARLCC Homo sapiens Hepatitis B virus OOID ELISA 0.02 0.018 0.006 0.019 0.02 50439 QDAYNAAG Mus musculus Mycobacterium scrofulaceum AID ELISA 50445 QDCNCSI Homo sapiens Hepatitis C virus OOID ELISA 0.04 0.038 0.028 0.039 0.04 98849 KIPAVFKIDA Homo sapiens Bos taurus DEWED WI 98850 KKGSEEE Homo sapiens Arachis hypogaea OOA IFAIH −0.05 −0.05 −0.053 −0.04 −0.051 116171 TQDQDP Homo sapiens Homo sapiens OAID ACAbB 116286 CGKGLS Oryctolagus cuniculus Mus musculus AID MS 0.01 0.014 0.008 0.017 0.009 123442 LLKDLRKN Homo sapiens Borna disease virus EWEIR WI 123443 LLTEHR Homo sapiens Homo sapiens OOID ELISA −0.02 −0.02 −0.025 −0.017 −0.022 47858 PHVVDL Homo sapiens Hepatitis E virus EWEIR ELISA 47860 PHWIK Capra hircus Human T-lymphotropic virus AID ACAbB 0.01 0.007 0.005 0.013 0.009 61783 STNKAVVSLS Bos taurus Bovine respiratory AID ELISA 61792 STNPKP Homo sapiens Hepatitis C virus OOID ELISA 0.03 0.025 0.019 0.029 0.03 118210 VMLYQISEE Homo sapiens Homo sapiens OAID WI 118217 VTKYITK Oryctolagus cuniculus Homo sapiens AID ELISA 0.05 0.054 0.05 0.057 0.048 130944 LFKHS Oryctolagus cuniculus Rattus norvegicus AID ELISA 130956 LPPRVTP Homo sapiens MD OOD WI 0.01 0.006 −0.002 0.011 0.012 23028 GVKYA Homo sapiens MD OAID WI 23032 GVLAKD Homo sapiens MD OOID ELISA 0 0 0 0.007 −0.002 51199 QKKAIE Oryctolagus cuniculus Vibrio cholerae AID ELISA 51204 QKKNK Homo sapiens Hepatitis C virus OOID ELISA 0.03 0.026 0.018 0.029 0.03 144783 SHVVT Homo sapiens Homo sapiens NI ELISA 144786 SMNRGRG Mus musculus MD AID ACAbB 0.03 0.032 0.023 0.033 0.029 134343 DLYIK Mus musculus Human papillomavirus AID NIAA 134344 DMAQV Mus musculus Homo sapiens AID WI 0 0 −0.009 0 0 38321 LNQLAGRM Anas platyrhynchos Duck hepatitis AID ELISA 38323 LNQTAR Oryctolagus cuniculus Bovine leukemia virus AID ACAbB −0.01 −0.008 −0.022 −0.01 −0.011 144657 GQITVD Homo sapiens Homo sapiens OAID ELISA 144661 GREGYP Oryctolagus cuniculus MD AID WI 0.02 0.024 0.013 0.027 0.022 21084 GLQN Mus musculus Chlamydia trachomatis AID ELISA 21093 GLRAQD Mus musculus Mycobacterium tuberculosis AID WI 0.03 0.03 0.013 0.03 0.032 98453 SGFSGSVQFV Oryctolagus cuniculus Neisseria meningitidis AID ELISA 98456 SICSNN Mus musculus Human respiratory virus AID IFAIH 0.04 0.037 0.027 0.04 0.041 98453 SGFSGSVQFV Mus musculus Neisseria meningitidis AID ELISA 98456 SICSNN Mus musculus Human respiratory virus AID IFAIH 0.04 0.04 0.027 0.04 0.041 107107 EAIQP Rattus norvegicus Homo sapiens AID ELISA 107110 EKERRP Homo sapiens MD OOA ELISA 0.05 0.048 0.043 0.053 0.05 110857 FTGEAY Homo sapiens Mycoplasma penetrans EWEIR ELISA 110859 GEESRIS Mus musculus Homo sapiens AID FIA 0 0.002 −0.017 0.003 0.003 36315 LGSAYP Mus musculus Mycobacterium leprae MD ELISA 36317 LGSGAFG Mus musculus Avian erythroblastosis virus AID ACAbB 0.01 0.01 0 0.011 0.009 122034 WNPAD Rattus norvegicus Torpedo californica AID ELISA 122035 WNPAD Rattus norvegicus MD AID RIA 0.01 0.01 0.001 0.01 0.009 25013 HVADIDKLID Mus musculus Puumala virus Kazan AID ELISA 25021 HVAPTH Homo sapiens Hepatitis C virus OOID ELISA 0 −0.002 −0.014 −0.001 0 36162 LGIHE Oryctolagus cuniculus Candida albicans AID ELISA 36166 LGIMGE Mus musculus Human respiratory virus AID RIA 0 −0.003 −0.007 0 −0.001 67253 TWEVLH Mus musculus Plasmodium vivax AID ELISA 67257 TWGEN Homo sapiens Hepatitis C virus OOID ACAbB −0.02 −0.022 −0.027 −0.021 −0.021 50990 QGYRVSSYLP Homo sapiens Hevea brasiliensis OOA WI 50998 QHEQDR Homo sapiens Hepatitis E virus OOID ELISA 0.01 0.01 −0.002 0.007 0.008 100458 RDVLQLYAPE Mus musculus Bacillus anthracis AID ELISA 100462 RFSTRY Homo sapiens Arachis hypogaea EWED ELISA 0.03 0.028 0.018 0.03 0.03 111036 TESTFT Homo sapiens Mycoplasma penetrans EWEIR ELISA 111039 TGVPID Bos taurus Bovine papillomavirus AID ELISA 0.03 0.035 0.02 0.033 0.03 117919 IFIEME Homo sapiens Homo sapiens OAID WI 117921 IGIIDLIE Mus musculus Homo sapiens AID WI 0.03 0.032 0.03 0.037 0.03 7127 CTDTDKLF Oryctolagus cuniculus Shigella flexneri AID ELISA 7128 CTDVST Homo sapiens SARS coronavirus OOID ELISA 0.01 0.006 −0.003 0.009 0.01 112253 PGQSPKL Homo sapiens Homo sapiens OAID ELISA 112255 PIRALV Mus musculus Homo sapiens AID ELISA 0.01 0.012 0.01 0.017 0.01 122034 WNPAD Rattus norvegicus Torpedo californica AID ELISA 122038 WNPDDY Rattus norvegicus MD AID RIA 0 0 −0.009 0 −0.001 131878 FLMLVG Homo sapiens Homo sapiens OAID ACAbB 131879 FLVAHT Mus musculus Mus musculus AID NIAA 0.03 0.032 0.028 0.037 0.033 70664 VQVVYDYQ Homo sapiens Treponema pallidum OOID ELISA 70667 VQWMNR Homo sapiens Hepatitis C virus OOID ELISA 0.05 0.05 0.041 0.05 0.05 71545 VTV Homo sapiens Helicobacter pylori OOID ELISA 71559 VTVRGGL Homo sapiens Arachis hypogaea OOA WI 0.04 0.04 0.032 0.043 0.042 127856 TDVRYKD Mus musculus Mus musculus AID ACAbB 127857 TDVRYK Mus musculus Mus musculus AID PFF 0.01 0.01 0.01 0.01 0.006 112149 GVGWIRQ Homo sapiens Homo sapiens OAID ELISA 112152 HHPART Homo sapiens Homo sapiens AID ELISA 0 0 0 0.007 0 119581 FSCSVMHE Homo sapiens Homo sapiens OAID ELISA 119582 GLQLIQL Mus musculus Homo sapiens AID RIA −0.01 −0.008 −0.01 −0.003 −0.011 144657 GQITVD Homo sapiens Homo sapiens OAID ELISA 144659 GREGYP Oryctolagus cuniculus MD AID WI −0.01 −0.006 −0.017 −0.003 −0.008 25013 HVADI Mus musculus Puumala virus Kazan AID ELISA 25022 HVAPTH Homo sapiens Hepatitis C virus OOID ELISA 0 −0.002 −0.014 −0.001 0 144652 GMRGM Homo sapiens Homo sapiens OAID ELISA 144654 GPHPTLE Mus musculus MD AID ELISA −0.02 −0.018 −0.027 −0.013 −0.02 104515 HDCRPKKI Mus musculus La Crosse virus AID IFAIH 104521 IGTLKKIL Rattus norvegicus Streptococcus pyogenes AID ELISA −0.04 −0.04 −0.053 −0.04 −0.041 7367 CYGDWA Homo sapiens Triticum aestivum OOA ELISA 7374 CYGLPDS Mus musculus Tityus serrulatus AID WI −0.02 −0.018 −0.043 −0.023 −0.018
7367 CYGDWA Homo sapiens Triticum aestivum OOA ELISA 7374 CYGLPDS Mus musculus Tityus serrulatus AID WI −0.02 −0.018 −0.043 −0.023 −0.018 144610 DFFTYK Mus musculus Porcine transmissible AID WI 144611 DFNGSF Oryctolagus cuniculus Escherichia coli AID ELISA −0.01 −0.007 −0.018 −0.01 −0.012 112047 ASTRESG Homo sapiens Homo sapiens OAID ELISA 112048 ATASTM Homo sapiens Homo sapiens AID ELISA 0.05 0.05 0.05 0.057 0.05 36136 LGGVFT Homo sapiens Dengue virus 2 OOID ELISA 36137 LGGWKLQ Homo sapiens Ambrosia artemisiifolia OOA RIA 0.01 0.01 0.007 0.013 0.009 115256 FRELKD Homo sapiens Bos taurus DEWED WI 115261 GDLEILL Homo sapiens Bos taurus OOA FIA −0.01 −0.01 −0.01 0 −0.009 129024 KADQLYK Homo sapiens Homo sapiens OAID ELISA 129026 KAKKP Oryctolagus cuniculus Homo sapiens AID ELISA 0.03 0.034 0.03 0.037 0.03 148481 YTRDLVYK Rattus norvegicus Homo sapiens AID WI 148483 YVPIVT Oryctolagus cuniculus MD AID ELISA 0 0.002 −0.007 0 −0.002 150850 GY Mus musculus Human papillomavirus AID ELISA 150853 HIGGLSI Homo sapiens Dermatophagoides farinae OOA ACAbB 0.04 0.038 0.04 0.043 0.039 107366 FPPKPKD Homo sapiens Homo sapiens OAID ELISA 107376 GDRSGYS Mus musculus Homo sapiens AID ACAbB −0.03 −0.028 −0.03 −0.023 −0.031 114859 ICGTD Homo sapiens Gallus gallus OOA WI 114865 IVERETR Rattus norvegicus Human herpesvirus AID ELISA 0.04 0.042 0.035 0.037 0.038 62149 SVHLF Homo sapiens MD OAID WI 62150 SVIALGS Equus caballus West Nile virus AID IFAIH −0.02 −0.021 −0.012 −0.013 −0.021 98455 SGSVQFVPIQ Mus musculus Neisseria meningitidis AID ELISA 98456 SICSNNP Mus musculus Human respiratory virus AID IFAIH 0.04 0.04 0.027 0.04 0.041 61783 STNKAV Bos taurus Bovine respiratory AID ELISA 61791 STNPKPQ Homo sapiens Hepatitis C virus EWEIR ACAbB 0.04 0.035 0.029 0.037 0.039 100318 NAPKT Mus musculus Bacillus anthracis AID ELISA 100319 NASSELH Homo sapiens Arachis hypogaea EWED ELISA 0 −0.002 −0.012 0 0 118947 PFSAPPPA Homo sapiens Homo sapiens OAID ELISA 118948 PGAIEQG Homo sapiens Human herpesvirus NI ACAbB −0.04 −0.04 −0.041 −0.036 −0.041 78323 YSFRD Mus musculus Bluetongue virus 1 AID ELISA 78341 AALTAEN Homo sapiens Streptococcus mutans EEE ELISA 0.01 0.008 0.007 0.013 0.01 145831 IPLGTRP Mus musculus Human papillomavirus AID ELISA 145841 KEDFRY Sus scrofa Classical swine AID PAC −0.04 −0.04 −0.045 −0.04 −0.043 119592 HTFPAVLQ Homo sapiens Homo sapiens OAID ELISA 119596 IHIPSEKI Mus musculus Homo sapiens AID RIA 0.01 0.012 0.01 0.017 0.009 58780 SKAANLSIIK MD Beet necrotic MD WI 58783 SKAFSN Oryctolagus cuniculus Influenza A virus AID RIA −0.01 −0.004 −0.014 −0.009 −0.013 115153 MKGVVC Homo sapiens Homo sapiens NI ELISA 115155 NNQRKK Mus musculus Dengue virus 2 AID ELISA 0.01 0.012 0.004 0.013 0.01 133629 LPLRF Oryctolagus cuniculus Gallus gallus AID ACAbB 133630 LPPGLHV Mus musculus MD AID SPR −0.01 −0.013 −0.021 −0.01 −0.01 96215 EEEEAE Homo sapiens Homo sapiens OAID ELISA 96216 EEEGLLK Mus musculus Mus musculus AID ELISA 0.08 0.082 0.078 0.087 0.08 39782 LTAASV Homo sapiens Triticum aestivum OOA ELISA 39788 LTAELKI Oryctolagus cuniculus Yersinia pestis AID ACAbB 0.01 0.014 −0.001 0.007 0.009 107479 KFNWYVD Homo sapiens Homo sapiens OAID ELISA 107482 KGEPGL Mus musculus Homo sapiens AID ACAbB 0 0.002 0 0.007 −0.001 63569 TETVNSDI Macaca mulatta Shigella flexneri AID ELISA 63573 TEVELKER Homo sapiens Mycobacterium leprae OOID ELISA 0.05 0.036 0.041 0.049 0.05 134028 DDTIS Mus musculus Homo sapiens AID NIAA 134029 DEDENQS Oryctolagus cuniculus Homo sapiens AID ELISA 0.05 0.053 0.05 0.05 0.048 23028 GVKYA Homo sapiens MD OAID WI 23032 GVLAKDV Homo sapiens MD EWEIR ACAbB 0 0 0 0.004 −0.003 115293 IMCVKK Homo sapiens Bos taurus DEWED WI 115295 INPSKEN Homo sapiens Bos taurus OOA FIA −0.03 −0.03 −0.03 −0.02 −0.029 65105 TLTPENTL Mus musculus Shigella flexneri AID ELISA 65110 TLTSGSD Oryctolagus cuniculus SARS coronavirus AID ELISA 0.01 0.013 −0.003 0.01 0.01 134471 PKPEQ Mus musculus Streptococcus pneumoniae AID FACS 134472 PLLPGT Homo sapiens Hepatitis B virus AID ELISA 0.02 0.018 0.019 0.02 0.016 142228 LYCYEQ Homo sapiens Human papillomavirus NI ELISA 142250 NWGDEP Felis catus Feline infectious AID ELISA 0.07 0.068 0.071 0.073 0.07 21549 GNYDFW Homo sapiens Staphylococcus aureus OOID ELISA 21553 GNYNYKY Mus musculus SARS coronavirus AID ELISA 0.03 0.032 0.021 0.031 0.03 21549 GNYDFWYQS Homo sapiens Staphylococcus aureus OOID ELISA 21553 GNYNYKY Oryctolagus cuniculus SARS coronavirus AID ELISA 0.03 0.034 0.021 0.031 0.03 34908 LAPLGE Homo sapiens Hepatitis E virus EWEIR ELISA 34914 LAPSTL Homo sapiens Human herpesvirus OOID ELISA 0.06 0.06 0.059 0.063 0.06 130454 CLFPNNSYC Mus musculus MD AID NIAA 130456 CRPQVN Homo sapiens MD OOD ACAbB 0.01 0.008 0.01 0.011 0.007 19644 GFVPSM Homo sapiens Hepatitis delta virus OOID ELISA 19647 GFVSASI Oryctolagus cuniculus Vaccinia virus WR AID ELISA −0.01 −0.006 −0.013 −0.009 −0.01 20678 GKRPE Mus musculus Streptococcus pyogenes AID WI 20680 GKSKRD Mus musculus Vaccinia virus WR AID WI 0.01 0.01 0.001 0.01 0.01 123278 GYLKDLPTT Ovis aries Fasciola hepatica AID ELISA 123282 HACQKK Rattus norvegicus Gallus gallus AID PFF −0.02 −0.016 −0.016 −0.02 −0.025 141067 PLSLEPDP Mus musculus Homo sapiens AID FACS 141073 REGVRW Mus musculus Homo sapiens AID ELISA 0.06 0.06 0.06 0.06 0.056 139248 SFAGTVIE Mus musculus Classical swine AID WI 139305 TAAQITQ Oryctolagus cuniculus Homo sapiens AID IP 0.03 0.033 0.026 0.03 0.03 104515 HDCRPKKI Mus musculus La Crosse virus AID IFAIH 104520 IAKEQE Rattus norvegicus Streptococcus pyogenes AID ELISA −0.06 −0.06 −0.073 −0.06 −0.061 113517 HLYADGLTD Mus musculus Human papillomavirus AID IFAIH 113518 HNKIQA Mus musculus Homo sapiens AID ELISA 0.02 0.02 0.011 0.02 0.019 156970 VERHQ Homo sapiens Homo sapiens OAID ELISA 156975 WSSTV Mus musculus MD AID ELISA 0.01 0.012 0.003 0.017 0.01 78252 PVQNLT Mus musculus Porphyromonas gingivalis AID WI 78253 QGGCGR Mus musculus Glycine max AID ELISA 0.02 0.02 0.017 0.02 0.018 6068 CCPDKNKS Mus musculus Human herpesvirus AID WI 6074 CCRHKQ Ovis aries MD AID ELISA 0.01 0.006 0.004 0.01 0.008 53109 RAGVCY Homo sapiens Triticum aestivum OOA ELISA 53116
RAILTA Oryctolagus cuniculus SARS coronavirus AID ELISA −0.02 −0.016 −0.037 −0.023 −0.02 147041 IPEQ Homo sapiens Triticum aestivum OOA WI 147064 KHQGA Homo sapiens Bos taurus OOID WI 0.06 0.06 0.047 0.057 0.06 70664 VQVVYDYQ Oryctolagus cuniculus Treponema pallidum AID ELISA 70667 VQWMN Homo sapiens Hepatitis C virus OOID ELISA 0.05 0.046 0.041 0.049 0.05 134343 DLYIK Mus musculus Human papillomavirus AID PhDIP 134344 DMAQV Mus musculus Homo sapiens AID PhDIP 0 0 −0.009 0 0
