Meta-Analysis of Pulmonary Transcriptomes from Differently Primed Mice Identifies Molecular Signatures to Differentiate Immune Responses following Bordetella pertussis Challenge

Table 1

Detailed information on the 27 gene clusters.

Clusters		Number of genes	Included genes
I	A	75	Abcf1, Abhd8, Agap3, Amotl2, Arap1, Arhgef40, Atp9a, B4galnt1, Cenpb, Cldn3, Cnp, Cpsf1, Cyp2s1, D17H6S56E-5, Dctn1, Ddr1, Egln2, Fasn, Flii, Lbp, Gadd45g, Gclc, Get4, Gpr56, Grn, Gstm1, Hgs, Hspb1, Itga3, Itga7, Itih4, Keap1, Kif1c, Lrp10, Mgll, Mmrn2, Nfe2l1, Os9, Pard6b, Parm1, Pex14, Piezo1, Pip4k2c, Pkm, Plbd2, Pnpla2, Por, Ralgds, Rbm19, Relb, Rftn1, Rgp1, Rgs12, Rnh1, Rptor, Rrp1, Rsph1, Rusc2, Sbno2, Sdc3, Sec61a1, Sema3b, Sh3tc1, Slc3a2, Spint2, Sqstm1, Stab1, Tap2, Tgm2, Tmbim6, Tnip1, Ucp2, Vars, Vpreb3, Zbtb7a
	B	5	Crip2, Hdac5, Isyna1, Lrg1, Plxnb2
	C	4	Prpf8, Psap, Psmd3, Shisa5
	D	4	Cyba, Ehd1, Mvp, Myh14
	E	2	Hadha, Man2b1
II	F	10	Ccl19, Ciita, Cxcl12, Cxcr2, Fam26f, Gm12407, Plbd1, Reg3g, Rrm2, BC048546
	G	8	Cd74, H2-Ab1, H2-D1, H2-DMa, H2-Eb1, H2-K1, Nup62-il4i1, Steap4
	H	7	Bpifb1, Cp, Cxcl17, Ltf, Prom1, Scgb3a1, Tmc5
	I	5	Cdhr1, Clca4, Pglyrp1, Ubd, 4833428L15Rik
III	J	3	Ccar1, Gbp10, Gbp6
	K	2	Iigp1, Mki67
	L	2	Ccna2, Ckap2
IV	M	10	Basp1, C1qb, Cd177, Cxcl13, Gm9758, Gp2, Pla2g2d, Speer4b, Speer4c, Speer4e
	N	6	Ccl20, Ighg, Igj, Igk, Igkv4-59, Igkv8-30
	O	5	Igh-VJ558, Ighm, Igkc, Igkv4-53, Pigr
	P	4	C3, C4a, C4b, Tnfaip2
	Q	4	Ccl8, Cxcl9, Retnla, Saa3
	R	4	Cfb, Clca3, Lcn2, Tff2
V	S	14	Ank3, BC117090, Bcl2a1a, Bcl2a1b, Bcl2a1c, Bcl2a1d, Cd209f, Cxcl5, Fpr2, Mmp3, Rorc, Scel, Tspan2, A130040M12Rik
	T	7	Chil3, Ear1, Ear10, Ear12, Ear2, Ear3, Rnase2a
	U	6	Aif1, H2-Aa, H2-Ea-ps, Ms4a7, S100a4, Serpina3g
	V	3	Ccl17, Clec4n, 2900060B14Rik
	W	3	Ctss, Fcgr2b, Wfdc17
VI	X	4	Agr2, Cxcl11, Igtp, Timp1
	Y	3	Cd14, Cxcl2, Fgg
	Z	3	Ccl2, Il1b, Il6
	AA	2	Arntl, Lox