NOVOMIR: De Novo Prediction of MicroRNA-Coding Regions in a Single Plant-Genome
Table 2
Specificity of NOVOMIR.
Data set
# sequences
Specificity
A. thaliana mRNAs
710
0.975
noncoding RNAs
1,296
1.000
noncoding RNAs
455
0.982
shuffled A. thaliana pre-miRNAs
2,760
0.998
A. thaliana repetitive elements
56
0.983
H. sapiens pseudohairpins
8,000
0.990
A. thaliana pseudohairpins
10,000
0.991
A. thaliana
50,000
1.000
631 A. thaliana tRNAs, 63 5.8 S rRNAs, 602 5 S rRNAs noncoding RNAs from RFAM in total 134,000โnt sequences of a length between 80 and 800โnt s randomly selected from the five chromosomes of A. thaliana Specificity is calculated as .