Vibrational Fingerprint of Erlotinib: FTIR, RS, and DFT Studies

Piergies, Natalia; Paluszkiewicz, Czesława; Kwiatek, Wojciech M.

doi:https://doi.org/10.1155/2019/9191328

Journal of Spectroscopy

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Abstract Introduction Materials and Methods Results and Discussion Conclusions Data Availability Conflicts of Interest Acknowledgments References Copyright Related Articles

Research Article | Open Access

Volume 2019 | Article ID 9191328 | https://doi.org/10.1155/2019/9191328

Vibrational Fingerprint of Erlotinib: FTIR, RS, and DFT Studies

Natalia Piergies,¹Czesława Paluszkiewicz,¹and Wojciech M. Kwiatek¹

Academic Editor: Pedro D. Vaz

Received21 Mar 2019

Revised18 Jun 2019

Accepted30 Jul 2019

Published20 Aug 2019

Abstract

In this study, we provide the first Fourier-transform infrared absorption spectroscopy (FTIR) and Raman spectroscopy (RS) analysis of a vibrational fingerprint of erlotinib, a drug which is applied in non-small cell lung cancer therapy, in solid state and solution in different pH conditions. Additionally, the performed DFT theoretical calculations in vacuum and PCM models support the interpretation of vibrational spectra and give insight into an optimized spatial configuration of the investigated drug. The present considerations show vibrational structure of erlotinib and details of its molecular geometry. Furthermore, we discuss the pH condition where the protonated –NH⁺ and C=N⁺ forms occur and indicate the spectral changes characteristic for the erlotinib protonation. It is of great of importance to better understand biological activity of the drug and to develop new tyrosine kinase inhibitors.

1. Introduction

In the last few decades, scientific research focused on understanding tumor formation [1–4]. Studies have shown that an accumulation of genetic and epigenetic mutations is one of the most serious factors promoting cancer disease [1, 2]. Therefore, there is a great interest in creating extremely sensitive and specific drugs that could be used in cancer therapy. Erlotinib, known also as TARCEVA (see Figure 1 for molecular structure), is one of the drugs with particular activity against epidermal growth factor receptor (EGFR) activation [5]. Overexpression of EGFR is observed in 50% of non-small cell lung cancers (NSCLCs). This tyrosine kinase inhibitor competes with adenosine triphosphate (ATP) for the binding side of EGFR, prevents the tyrosine phosphorylation, and thus blocks signaling pathway in the target cell. Erlotinib is applied in NSCLC therapy for patients with recognized EGFR-activating mutations [6–8]. It shows response rates of 10% to 27% in a broad NSCLC patient population after failure of chemotherapy [5].

Previously, we have shown surface-enhanced Raman spectroscopy (SERS) investigation of erlotinib immobilized onto potential silver colloidal nanocarriers [9]. These studies present vibrational spectroscopy characterization by means of Raman spectroscopy (RS) and Fourier-transform infrared absorption spectroscopy (FTIR) of the molecular structure of erlotinib in the solid state and solution in different pH conditions. These two complementary methods are commonly used for qualitative and quantitative analysis of different types of samples in various conditions and physical states [10–15]. RS and FTIR are governed by different quantum mechanical selection rules [16]. Mainly, vibrations that change polarizability of a molecule are active in RS spectra, while these which change molecular dipole moment are observed in FTIR spectra. Therefore, only the use of both spectroscopic methods provides comprehensive analysis of the investigated molecular structure. Additionally, by means of the density functional theory (DFT) calculations with the B3LYP hybrid theory level, the optimized geometry, wavenumber, and intensity of the vibrational bands of the investigated drug are provided. Such calculation method provides very good agreement between the calculated spectra and the corresponding experimental spectra of many molecules [10, 17–20]. Since there are a lot of publications regarding biological activity of erlotinib [21] and its successful application in NSCLC therapy [22, 23], there are no reports describing the 3D structure of this drug in detail what determines its application. Many research data confirm that the compounds indicating similar chemical structure show different biological features [24, 25]. The spatial orientation of particular bonds determines therapeutic effect of the molecule. Deep knowledge and understanding of the molecular and geometric structure together with the recognized biological activity is important for developing new drug alternatives with more specific interaction or by improving the existing medical agents [26, 27]. Thus, the present study is crucial for better understanding the biological activity of erlotinib and for development of new tyrosine kinase inhibitors.

2. Materials and Methods

2.1. RS Measurements

The RS measurements for erlotinib were performed using the inVia Renishaw spectrometer combined with a CCD detector and confocal microscope Leica with the 20x magnification. The 532.8 nm laser wavelength with a 0.1% of the laser power was used as an excitation source. 3 scans were recorded in the range 2250–400 cm⁻¹, each with 30 s of the integration time and at 1 cm⁻¹ spectral resolution.

2.2. FTIR Measurements

The FTIR experiments were performed using the vacuum VERTEX 70v FTIR Spectrometer for powder sample in the ATR mode with diamond crystal. The system is equipped with a KBr beamsplitter and a wide range DLaTGS detector. 128 scans were enough to acquire a good signal-to-noise ratio. The signal was collected in the range 2250–400 cm⁻¹ at 1 cm⁻¹ spectral resolution. Advanced ATR correction was applied for the spectrum before data analysis.

2.3. Theoretical Calculations

In order to optimize the ground-state geometry of the investigated drug and to obtain its theoretical vibrational spectra, the Gaussian 03 suite [28] with the density functional theory (DFT) method at the B3LYP theory level in vacuum and PCM model was employed. Such hybrid functional with 6-311G(d, p) basis set was successfully applied for calculations of similar molecules [18–20, 29]. During the optimization, no imaginary wavenumbers were observed. This implies that the optimized structures indicate energy minima on the potential energy surface for nuclear motion.

The theoretical Raman intensities were calculated using Raint software, which applied the following relationship [30]:where is given in arbitrary units, is a constant and equal to 10⁻¹², is the wavenumber of laser excitation (cm⁻¹) (18768.8 cm⁻¹ for 532.8 nm laser), is the DFT calculated frequency of the normal mode, is the DFT calculated Raman scattering activity of the normal mode , is the temperature (K), is the Planck constant, and is the Boltzmann constant.

The calculated RS and IR spectra were reproduced by the GaussSum 0.8 free software package [31]. For a better fit to the experimental vibrational bands, the theoretical wavenumbers were scaled using scaling factor of 0.991. The spectra were plotted with 11 cm⁻¹ FWHM (full width at half maximum) and a 50%/50% Gaussian/Lorentzian band shape.

After comparison between the experimental and calculated spectral bands, some shortcomings can be observed. Such differentiation may result from conditions occurring in the experimental measurements and performed calculations. The RS and IR spectra were recorded for the sample in a solid state, while the DFT calculations were performed in vacuum. However, the obtained correlation is appropriate. On the other hand, the theoretical RS spectrum calculated in a PCM model corresponds very well with that measured in a solution.

3. Results and Discussion

3.1. Molecular Geometry

In order to identify the stable structure of erlotinib, twenty conformers were taken into consideration. Based on the differences between the calculated total energies of the examined conformers from DFT, the structure with the lowest energy was chosen for further analysis. Additionally, the theoretical RS and IR spectra of the selected conformer provide the best match to the experimental results. The bond lengths and angles of the optimized erlotinib structure obtained by means of the DFT/B3LYP method with 6-311G(d, p) basis set are given in Table 1, and the numbering of atoms is provided in Figure 1. The calculated value of the C≡C (C₁–C₂) bond which is 1.204 Å is comparable with the typical C≡C bond of the phenylacetylene (1.216 Å) [32, 33]. Similar observation occurs for the C₂–C₃ and C₃–C₄ bonds (see Figure 1), where for erlotinib, these distances are 1.430 Å and 1.403 Å, respectively. The corresponding bond lengths of the phenylacetylene molecule are equal to 1.448 Å and 1.395 Å, respectively [32]. In the case of the quinazoline moiety, which consisted of two fused aromatic rings, namely, benzene and pyrimidine rings, the C–N bonds indicate definitely shorter length in comparison with the corresponding bonds observed in the pyrimidine [34]. The C₁₆–N₁₇, N₁₇–C₁₈, C₁₈–N₁₉, and N₁₉–C₁₀ bonds are equal to 1.367 Å, 1.310 Å, 1.351 Å, and 1.323 Å, respectively, while in the pyrimidine analogues [34], these bonds are 1.382 Å, 1.379 Å, 1.378 Å, and 1.374 Å, respectively. Also, the calculated angle bonds C₁₆–N₁₇–C₁₈ and C₁₈–N₁₉–C₁₀ (115.6^° and 117.4^°, respectively) differ from the corresponding angles of the pyrimidine [30], which are equivalent to 125.7^° and 126.0^°, respectively. On the other hand, the C–O bonds in the ethoxy moieties of the calculated erlotinib structure are almost the same length as the corresponding bonds in the ethoxy isomers [35, 36].

The C₁₃–O₂₀, C₁₄–O₂₅ bonds and the O₂₀–C₂₁, O₂₅–C₂₆ bonds are equal to 1.364 Å, 1.356 Å and 1.441 Å, 1.428 Å, respectively, while for the ethoxy benzaldehyde derivatives [32], these bonds are 1.359 Å and 1.433 Å, respectively. However, there are some differences for the C–O–C and O–C–C bond angles of erlotinib in comparison with those from the mentioned aromatic isomer [35]. The C₁₃–O₂₀–C₂₁, C₁₄–O₂₅–C₂₆ bond angles and the O₂₀–C₂₁–C₂₂, O₂₅–C₂₆–C₂₇ bond angles are equivalent to 119.2^°, 118.9^° and 108.1^°, 108.4^°. In the case of the corresponding bonds [35, 36], these angles are equal to 116.6^° and 107.7^°, respectively.

3.2. RS, FTIR, and DFT Studies

Figure 2 presents experimental and theoretical RS and FTIR spectra for the erlotinib drug in the spectral range of 2250–400 cm⁻¹. The theoretical wavenumbers, calculated at the DFT/B3LYP/6-311G(d, p) level in vacuum, demonstrate good correlation with the experimental bands. Moreover, the vibrational spectra for the aniline [37] and pyrimidine [38, 39] and RS spectra for phenylacetylene [40] and erlotinib [41, 42] were taken into consideration. All wavenumbers together with the appropriate assignments are listed in Table 2.

3.2.1. Aromatic Vibrations

As expected, the most intense RS bands are due to the vibrations of the phenylacetylene and quinazoline moieties (see Figure 2(a)). The bands assigned to the phenylacetylene ring modes, namely, ν(C≡C), ν(CC)_Phe, ρ_b(CH)_Phe, δ(Phe), ρ_boop(CH)_Phe/δ_oop(Phe), ρ_b(CH)_C≡CH, δ_oop(Phe), and δ(Phe), are observed at 2112 cm⁻¹, 1572–1571 cm⁻¹, 1193–1179 cm⁻¹, 1170–1166 cm⁻¹, 1004–1001 cm⁻¹, 700–702 cm⁻¹, 651–641 cm⁻¹, 624–619 cm⁻¹, and 598 cm⁻¹, respectively (see Table 2). Some of these bands appear also in the corresponding FTIR spectrum (see Figure 2(c)). Additionally, the weak and medium intensity FTIR bands from the phenylacetylene vibrations are noticed at 972–970 cm⁻¹ [ρ_boop(CH)_Phe], 941 cm⁻¹ [ρ_boop(CH)_Phe], and 551–540 cm⁻¹ [ρ_b(CC)_CΦC/δ(Phe)]. Moreover, the discussed aromatic ring modes indicate contribution to the bands observed at 586–574 cm⁻¹ [δ(Phe)]. For the quinazoline moiety, the characteristic RS bands appear in the spectral ranges 1612–1611 cm⁻¹, 1595–1589 cm⁻¹, 1311–1303 cm⁻¹, 1247–1242 cm⁻¹, and 730–713 cm⁻¹. These spectral features are assigned to ν(CC)_Q, ν(CN)_Q/ν(CC)_Q, and ρ_b(Q), respectively. There are also some bands due to the quinazoline vibrations appearing only in the FTIR spectrum, namely, the in-plane and out-of-plane deformation modes [δ(Q) and δ_oop(Q)] observed at 1099–1088 cm⁻¹, 929–921 cm⁻¹, 798–796 cm⁻¹, 668–658 cm⁻¹, and 576–565 cm⁻¹, respectively. However, it should be noticed that the considered aromatic moiety consists of two fused aromatic rings: phenyl and pyrimidine. Therefore, some spectral features associated with these aromatic rings separately can be distinguished. The main influence on the bands in the spectral ranges 730–713 cm⁻¹ and 514–512 cm⁻¹ indicates phenyl ring. The mentioned bands are assigned to the ρ_boop(CH)_Phe-Q/δ_oop(Phe-Q) vibrations. In the case of the pyrimidine moiety of the quinazoline, the stronger contribution to the bands at 1413–1403 cm⁻¹ and 1219–1215 cm⁻¹ attributed to the ν(C=N)_Q and δ(PYMD)/ν(C_QO) modes, respectively, is observed.

3.2.2. Aliphatic Vibrations

The presence of the methoxy and ethoxy groups is manifested by the several characteristic RS and FTIR spectral features (see Figure 2). These bands appear in the spectral ranges 1514–1513 cm⁻¹, 1230–1222 cm⁻¹, 1128–1126 cm⁻¹, 1083 cm⁻¹, 1075–1072 cm⁻¹, 1052–1049 cm⁻¹, 877–871 cm⁻¹, and 463–455 cm⁻¹ and correspond to the ρ_s(CH₂)_OCH2/ρ_s(CH₂)_CH3/ρ_s(CH₂)_CH2O, ρ_w/t(CH₂)_CH3/ν(CO)_CH2O, δ(CH), ν(CC)_CH2-CH2/ρ_w(CH₂)_CH3, ν(OC)_OCH2/ρ_r(CH₂), ν(CC)_CH2-CH2/ν(OC)_OCH3, ρ_r(OC₂H₄), and δ(CCO)/δ(COC) vibrations, respectively. In the case of the amino moiety, the strong and medium intensity bands due to the ρ_b(NH) and ν(CN) modes occur in the spectral ranges 1534–1532 cm⁻¹, 1447–1441 cm⁻¹, and 1278–1275 cm⁻¹, respectively. Additionally, this functional group indicates contribution to the spectral features at 1413–1403 cm⁻¹ and 1372–1364 cm⁻¹ assigned to the ρ_b(NH) mode.

3.2.3. pH-dependent RS Studies

Due to the possible protonation occurring for the amino and quinazoline moieties of erlotinib, the RS experiments in various pH conditions were performed. Figure 3 presents the RS spectra of the investigated drug at pH between 3 and 11 in the spectral range of 2250–400 cm⁻¹. Additionally, the calculations at the DFT/B3LYP/6-311G(d, p) level in PCM model were performed. The theoretical RS spectrum correlates very well with the corresponding RS spectrum measured for the investigated drug at pH = 7 (see Figure 3). Table 3 lists the wavenumbers and the appropriate band assignments. The obtained vibrational data indicate almost the same spectral pattern; however, some relative intensity changes become noticeable upon different pH values, and they prove the presence of protonated structures. The RS spectra of erlotinib collected in the acidic environment show strong and medium intensity bands due to the amino group vibrations, namely, ∼1534 cm⁻¹, ∼1464 cm⁻¹, ∼1368 cm⁻¹, and ∼1280 cm⁻¹ associated with the ρ_b(NH) and ν(CN) modes, respectively (see Tables 2 and 3). Nevertheless, together with the pH increasing from 7 to 11, the crucial weakening of the band intensities especially related to the ρb(NH) vibrations is observed (see Figure 3). According to the literature, the erlotinib dissociation constant is equal to 5.4 [43]; thus, the spectral patterns discussed above should be the result of the –NH⁺ presence in the acidic medium and its absence in the neutral and alkaline environments. In the case of quinazoline, the observed spectral variations suggest that the protonation for this moiety may also occur. The strong and medium intensity bands at ∼1408 cm⁻¹ [ν(C=N)_Q] and ∼1308 cm⁻¹ [ν(CC)_Q]/ν(CN)_Q] and ∼1241 cm⁻¹ [ν(CC)_Q]/ν(CN)_Q] in the RS spectra for erlotinib at pH equal to 3 and 5 indicate significant weakening and shift to ∼1394 cm⁻¹ and ∼1311 cm⁻¹ and ∼1246 cm⁻¹, respectively, when the pH rises above 7 (see Figure 3). Such phenomenon may support the statement that in the acidic medium, the protonated C=N⁺ form occurs. This is also confirmed by the noticed blue shift for the band assigned to ν(CC)_Phe-Q from ∼1590 cm⁻¹ (pH = 3) to ∼1596 cm⁻¹ (pH = 11) upon pH values increasing (see Figure 3). This spectral feature has been already considered as a pH-sensitive band [44]. Furthermore, in the RS spectrum for erlotinib at pH = 5 appear bands associated with the ethoxy group vibrations. The mentioned bands are visible at ∼1513 cm⁻¹ and ∼1345 cm⁻¹, and they are assigned to the ρ_s(CH₂) and ρ_w(CH₂), respectively. Intensity of these bands becomes stronger upon pH increasing. Moreover, in the neutral and alkaline environments, bands at ∼1230 cm⁻¹ and ∼702 cm⁻¹ occur due to the ρ_w/t(CH₂)CH₃/ν(CO)_CH2O and δ(C_QOC) modes.

4. Conclusions

In this study, we performed the first characterization of vibrational structure of erlotinib, a drug approved in NSCLC therapy, based on RS and FTIR spectroscopies in solid state and solution in different pH conditions. Additionally, the optimized molecular structure of erlotinib was elucidated in detail based on the experimental data, which were supported by DFT/6-311G(d, p) calculations. Simultaneously, the performed RS measurements for the investigated drug in different pH conditions show that in the acidic environment, the protonated –NH⁺ and C=N⁺ forms occur.

Data Availability

The data used to support the findings of this study are available from the corresponding author upon request.

Conflicts of Interest

The authors declare that there are no conflicts of interest.

Acknowledgments

This study was supported by the National Science Centre Poland (grant no. 2016/21/D/ST4/02178 to N.P.).This research was performed using equipment purchased in the frame of the project cofunded by the Małopolska Regional Operational Program Measure 5.1 Krakow Metropolitan Area as an important hub of the European Research Area for 2007–2013, project no. MRPO.05.01.00-12-013/15. The authors kindly acknowledge the PL-Grid Infrastructure (Academic Computer Center “Cyfronet” in Krakow) for computational facilities.

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Copyright © 2019 Natalia Piergies et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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