Journal of Tropical Medicine

Research Article

New Genetic Variants of Leptospira spp Characterized by MLST from Peruvian Isolates

Table 2

Species, allelic profiles, and STs know and news of pathogenic Leptospira spp, identified from human and rodent isolates from the Iquitos city (Peruvian Amazon), collected from 2002 to 2013.


N°	Code of sample	Sources of isolates	Places of isolates	Date of isolates	Species by PFGE	Species by MLST	glmU	pntA	sucA	tpiA	pfkB	mreA	caiB	ST

1	IQ_131	Human	San Juan Bautista	26/04/2013	L. interrogans	L. interrogans	3	3	3	3	4	5	5	37
2	IQ_132	Human	Belén	7/05/2013	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
3	IQ_133	Human	Belén	14/05/2013	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
4	IQ_150	Human	Belén	3/06/2013	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
5	LEP_139	Human	Iquitos	28/05/2003	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
6	LEP_141	Human	Iquitos	11/06/2003	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
7	LEP_144	Human	Iquitos	3/10/2003	L. interrogans	L. interrogans	3	3	3	3	4	5	5	37
8	LEP_146	Human	Iquitos	14/11/2003	L. interrogans	L. interrogans	3	3	3	3	4	5	5	37
9	LEP_148	Human	Iquitos	1/09/2004	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
10	LEP_159	Human	San Juan Bautista	9/08/2004	L. interrogans	L. interrogans	3	3	3	3	4	5	5	37
11	LEP_167	Human	San Juan Bautista	2/07/2004	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
12	LEP_168	Human	San Juan Bautista	28/05/2004	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
13	LEP_172	Human	Belén	3/06/2003	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
14	LEP_173	Human	Belén	25/08/2003	L. interrogans	L. interrogans	3	3	3	3	4	5	5	37
15	PLEP043	Human	Belén	17/02/2012	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
16	PLEP044	Human	Belén	17/02/2012	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
17	IQ_126	Human	Belén	9/08/2012	Unknown	L. kirschneri	78	20	13	22	33	18	23	298
18	LEP_142	Human	Iquitos	22/08/2003	L. interrogans	L. noguchi	81a	82	88a	79a	114a	78a	72a	299b
19	LEP_143	Human	Iquitos	14/10/2003	L. santarosai	L. santarosai	40	55	85	50	103	47	43	300
20	LEP_165	Human	San Juan Bautista	10/11/2003	L. noguchii	L. noguchi	38	89a	45	79a	113a	40	40	301b
21	LEP_170	Human	Iquitos	7/12/2004	L. santarosai	L. santarosai	80	90	54	50	74	47	71	302
22	PLEP053	Human	Belén	11/05/2012	L. noguchii	L. noguchi	38	91a	46	46	46	40	40	303b
23	PLEP065	Human	Belén	20/08/2012	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
24	PLEP051	Human	Belén	31/05/2012	L. santarosai	L. santarosai	45	51	47	50	103	47	43	304
25	IQ_122	Human	Belén	14/09/2012	Unknown	L. noguchi	35	92	86	39	114a	79	34	305b
26	LEP_152	Human	San Juan Bautista	4/09/2003	L. santarosai	L. santarosai	40	88a	47	50	108	47	43	306b
27	LEP_147	Human	Iquitos	7/02/2004	L. santarosai	L. santarosai	73	90	47	50	108	81a	43	311b
28	LEP_153	Human	San Juan Bautista	27/10/2004	L. santarosai	L. santarosai	40	53	87	80	115	80	43	312
29	LEP_154	Human	San Juan Bautista	9/12/2004	L. santarosai	L. santarosai	40	53	87	80	115	80	43	312
30	LEP_155	Human	San Juan Bautista	21/01/2005	L. santarosai	L. santarosai	40	53	87	80	115	80	43	312
31	LEP_157	Human	San Juan Bautista	12/07/2004	Unknown	L. santarosai	40	53	87	80	115	80	43	312
32	LEP_169	Human	Iquitos	17/12/2004	L. santarosai	L. santarosai	40	53	87	80	115	80	43	312
33	LEP_150	Human	Iquitos	12/04/2005	L. santarosai	L. santarosai	79	90	82	50	74∼	47	43	x
34	LEP_151	Human	San Juan Bautista	4/09/2003	Unknown	L. noguchi	38	89∼	46	46	117	40	36	x
35	LEP_171	Human	Iquitos	28/04/2004	Unknown	L. noguchi	35	92	86	39	112	79	62∼	x
36	L_236	Rodent	Punchana	17/10/2013	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
37	L_42	Rodent	Belén	15/12/2011	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
38	L_110	Rodent	Punchana	10/01/2013	L. interrogans	L. borgpetersenii	24	32	30	36	67	26	12	149
39	L_128	Rodent	Iquitos	3/10/2012	L. interrogans	L. santarosai	82	53	47	82a	55	81a	43	307b
40	L_185	Rodent	San Juan Bautista	6/06/2005	L. santarosai	L. santarosai	82	53	47	82a	55	81a	43	307b
41	L_186	Rodent	Punchana	1/10/2004	L. interrogans	L. santarosai	40	53	47	50	116	80	43	309b
42	L_219	Rodent	Iquitos	13/10/2004	L. santarosai	L. santarosai	80	53	2	50	74	81a	43	310b
43	L_165	Rodent	Punchana	27/08/2013	L. interrogans	L. noguchi	38	89a	45	79a	113a	40	40	301b
44	L_15	Rodent	Belén	17/08/2011	L. interrogans	L. interrogans	3	3	3	3	4	5	5	37
45	L_200	Rodent	Punchana	1/10/2004	L. interrogans	L. interrogans	1	1	2	2	10	4	8	17
46	L_216	Rodent	San Juan Bautista	30/10/2004	L. santarosai	L. santarosai	80	53	47	50	74	81a	43	322b
47	L_184	Rodent	San Juan Bautista	6/06/2005	L. santarosai	L. santarosai	79	55	89a	50	108	58	43	319b
48	L_225	Rodent	Belén	20/09/2013	L. interrogans	L. noguchi	38	46	45	41	117a	5	36	320b

New alleles (a) and new STs (b) are in red and undefined alleles are indicated with (∼). Samples in bold indicates the three isolates with incomplete allelic profiles.