|
| Name | url | Reference | Description |
|
| Databases dedicated to DNA repair |
|
| REPAIRtoire | http://repairtoire.genesilico.pl/ | [22] | Database of DNA repair pathways |
| repairGENES | http://www.repairgenes.org/ | unpublished | Database of DNA repair genes |
| Human DNA Repair Genes | http://sciencepark.mdanderson.org/labs/wood/DNA_Repair_Genes.html | [17] | Database of human DNA repair genes |
| Repair-FunMap | currently unavailable | [23] | A database of interactions between proteins involved in DNA repair and other proteins |
|
| Other databases relevant to DNA repair |
|
| KEGG | http://www.genome.jp/kegg/ | [21] | Kyoto Encyclopedia of Genes and Genomes |
| Reactome | http://www.reactome.org/ReactomeGWT/entrypoint.html | [24] | Database of human pathways and reactions |
| GeneSNPs | http://www.genome.utah.edu/genesnps/ | | This Environmental Genome Project web resource integrates gene, sequence, and polymorphism data into individually annotated gene models. The human genes included are related to DNA repair, cell cycle control, cell signaling, cell division, homeostasis, and metabolism |
| Mouse Mutation Database | http://pathcuric1.swmed.edu/research/research.htm | [25] | The Database of mouse strains carrying targeted mutations in genes affecting cellular responses to DNA damage |
| BioCyc (EcoCyc, MetaCyc) | http://biocyc.org/ | [26] | Experimentally studied metabolic pathways and enzymes from more than 1,500 organisms |
| BRENDA | http://www.brenda-enzymes.org/ | [27] | The main collection of enzyme functional data |
| Pathway Commons | http://www.pathwaycommons.org/pc/ | [28] | A collection of publicly available pathway data from multiple organisms |
| NGSethDB | http://bioinfo2.ugr.es/NGSmethDB/gbrowse/hg19/ | [29] | Database for next-generation sequencing single-cytosine-resolution DNA methylation data |
| DNAreplication | http://DNAreplication.net/ | [30] | Database for the eukaryotic DNA replication community |
| MethyCancer | http://methycancer.psych.ac.cn/ | [31] | Links between DNA methylation levels and cancer |
| PubMeth | http://matrix.ugent.be/pubmeth/ | [32] | Links between DNA methylation levels and cancer |
| MethDB (2009) | http://www.methdb.de/ | [33] | The database for DNA methylation and environmental epigenetic effects |
| OriDB | http://www.oridb.org/index.php | [34] | Confirmed and predicted DNA replication origin sites |
| REBASE | http://rebase.neb.com/rebase/rebase.html | [35] | Enzymes and genes for DNA restriction and modification in prokaryotes |
| ROSPath | http://rospath.ewha.ac.kr/ | [36] | Reactive oxygen species (ROS) signaling pathway proteins |
| Pathguide | http://www.pathguide.org/ | [37] | A listing of pathway, signal transduction, and protein-protein interaction databases |
| CREMOFAC | http://www.jncasr.ac.in/cremofac/ | [38] | Chromatin remodeling factors |
| DAnCER | http://wodaklab.org/dancer/ | [39] | Disease-Annotated Chromatin Epigenetics Resource |
| Telomerase database | http://telomerase.asu.edu/ | [40] | Sequences and structures of the RNA and protein subunits of telomerase, mutations of telomerase components |
| Replication Domain | http://www.replicationdomain.com/ | [41] | Replication timing database and genome-wide data visualization tool |
|
