Mathematical Problems in Engineering / 2013 / Article / Tab 2

Research Article

A Novel Framework Based on ACO and PSO for RNA Secondary Structure Prediction

Table 2

A comparison of the highest matching base pair structures from PAF and mfold in terms of sensitivity, specificity, and -measure.

SequenceKnown bpsPredicted bpsTPFPFNSensitivitySpecificity -measure
PAFmfoldPAFmfoldPAFmfoldPAFmfoldPAFmfoldPAFmfoldPAFmfold

D. virilis 2332472521038214417013015144.235.241.732.542.933.8
X. laevis 25123524511611311913213513846.245.049.446.147.745.6
H. marismortui 38313428293510973.776.390.385.381.280.6
A. lagunensis 11312413385743959283975.265.568.655.671.760.2
M. anisopliae var.12011011691921924292875.876.782.779.379.178.0
H. rubra 13814116782835984565559.460.158.149.758.854.4
A. griffini 131160174102955879293677.972.563.854.670.162.3
H. sapiens 2662602581249513616314217146.635.747.736.847.236.3
A. fulgens 265249241997415016716619137.427.939.830.738.529.2
S. acidocaldarius 4684834962812712022251871976057.958.154.659.156.2

Averages202.3204211.6111.1100.892.9110.891.2101.559.6455.2860.0252.5259.6353.66

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