Research Article
Simulating Growth Kinetics in a Data-Parallel 3D Lattice Photobioreactor
Algorithm 1
Kawasaki exchange Monte Carlo algorithm including PSF model and mutual shading effects.
| for 3D lattice | | blank lattice, initialise 10 random cells | | for all time-steps do | | compute cell shading map, CUDA | | for all blocks of size in lattice do | | for all 33 sites in each block, random order do | | thread return if out of bounds | | thread return if empty cell | | if site contains bubble then | | diffuse bubble upward or laterally randomly | | return | | end if | | compute left and right shading (scalar values, ) | | compute illumination on site, | | kill cell and return on probability cell_death_prob . | | choose random site | | perform state transitions and state imperatives (shown in Algorithm 2) | | perform Kawasaki site exchange (shown in Algorithm 3) | | end for | | end for | | end for |
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