A Liquid Chromatography with Tandem Mass Spectrometry-Based Proteomic Analysis of Primary Cultured Cells and Subcultured Cells Using Mouse Adipose-Derived Mesenchymal Stem Cells
Table 3
Identification of endogenous proteins contained in mMSC-AT_P0 only, not in mMSC-AT_P3.
Exclusive P0 group
UniProt/Swiss-Prot ID
Description
Molecular function
FABP5_MOUSE
Fatty acid-binding protein, epidermal
Fatty acid binding, transporter activity
AMPN_MOUSE
Aminopeptidase N
Metal ion binding, metalloaminopeptidase activity, metallopeptidase activity, peptide binding, zinc ion binding
AOFA_MOUSE
Amine oxidase [flavin-containing] A
Oxidoreductase activity, primary amine oxidase activity, protein binding
ATP binding, ligase activity, metal ion binding, nucleotide binding, succinate-CoA ligase (ADP-forming) activity
SYUG_MOUSE
Gamma-synuclein
Protein binding
GUAD_MOUSE
Guanine deaminase
Guanine deaminase activity, hydrolase activity, metal ion binding, zinc ion binding
ISG15_MOUSE
Ubiquitin-like protein ISG15
Protein binding, protein tag
STK24_MOUSE
Serine/threonine-protein kinase 24
ATP binding, cadherin binding involved in cell-cell adhesion, metal ion binding, nucleotide binding, signal transducer, downstream of receptor, with serine/threonine kinase activity, transferase activity
P-P-bond-hydrolysis-driven protein transmembrane transporter activity, mitochondrion targeting sequence binding, protein channel activity, unfolded protein binding
POZ domain binding, cyclin binding, protein binding, protein heterodimerization activity, protein homodimerization activity, ubiquitin protein ligase activity, ubiquitin protein ligase binding
HA11_MOUSE
H-2 class I histocompatibility antigen, D-B alpha chain
RNA binding, beta-2-microglobulin binding, peptide antigen binding, protein binding
ACAD9_MOUSE
Acyl-CoA dehydrogenase family member 9, mitochondrial
Acyl-CoA dehydrogenase activity, electron carrier activity, fatty-acyl-CoA binding, flavin adenine dinucleotide binding, oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
TGBR3_MOUSE
Transforming growth factor beta receptor type 3
PDZ domain binding, SMAD binding, coreceptor activity, glycosaminoglycan binding, protein binding, transforming growth factor beta binding, transforming growth factor beta receptor activity, type III, transforming growth factor beta-activated receptor activity, type II transforming growth factor beta receptor binding
A4_MOUSE
Amyloid-beta A4 protein
DNA binding, PTB domain binding, enzyme binding, growth factor receptor binding, heparin binding, identical protein binding, peptidase activator activity, peptidase inhibitor activity, serine-type endopeptidase inhibitor activity, transition metal ion binding
RBMS2_MOUSE
RNA-binding motif, single-stranded-interacting protein 2
Fatty-acyl-CoA reductase (alcohol-forming) activity, long-chain-fatty-acyl-CoA reductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Disintegrin and metalloproteinase domain-containing protein 15
SH3 domain binding, integrin binding, metal ion binding, metalloendopeptidase activity, metallopeptidase activity, peptidase activity, protein binding
SNP23_MOUSE
Synaptosomal-associated protein 23
SNAP receptor activity, syntaxin binding
PRIO_MOUSE
Major prion protein
ATP-dependent protein binding, chaperone binding, copper ion binding, identical protein binding, ion channel binding, lamin binding, microtubule binding
LY6A_MOUSE
Lymphocyte antigen 6A-2/6E-1
PLP2_MOUSE
Proteolipid protein 2
Chemokine binding
TSNAX_MOUSE
Translin-associated protein X
A2A adenosine receptor binding, RNA binding, metal ion binding, protein complex binding, sequence-specific DNA binding, single-stranded DNA binding
T106A_MOUSE
Transmembrane protein 106A
Molecular function
UBFD1_MOUSE
Ubiquitin domain-containing protein UBFD1
RNA binding, cadherin binding involved in cell-cell adhesion
PLEK_MOUSE
Pleckstrin
Phosphatidylinositol-3,4-bisphosphate binding, protein homodimerization activity, protein kinase C binding
TPBG_MOUSE
Trophoblast glycoprotein
ILEUA_MOUSE
Leukocyte elastase inhibitor A
Serine-type endopeptidase inhibitor activity
TIMP2_MOUSE
Metalloproteinase inhibitor 2
Enzyme activator activity, integrin binding, metal ion binding, metalloendopeptidase inhibitor activity, peptidase inhibitor activity, protease binding
Protein N-terminus binding, protein homodimerization activity, protein kinase binding
UFM1_MOUSE
Ubiquitin-fold modifier 1
Molecular function
SRXN1_MOUSE
Sulfiredoxin-1
ATP binding, antioxidant activity, nucleotide binding, oxidoreductase activity, oxidoreductase activity, acting on a sulfur group of donors, sulfiredoxin activity
GAPR1_MOUSE
Golgi-associated plant pathogenesis-related protein 1
Protein homodimerization activity
CSN5_MOUSE
COP9 signalosome complex subunit 5
Hydrolase activity, metal ion binding, metallopeptidase activity, protein binding, thiol-dependent ubiquitin-specific protease activity, transcription coactivator activity
OCAD1_MOUSE
OCIA domain-containing protein 1
Molecular function
DCAKD_MOUSE
Dephospho-CoA kinase domain-containing protein
ATP binding, dephospho-CoA kinase activity, nucleotide binding
SH2 domain binding, actin binding, alpha-actinin binding, calcium ion binding, dystroglycan binding, protein binding, protein complex binding, structural constituent of muscle, tubulin binding, vinculin binding
RAP2A_MOUSE
Ras-related protein Rap-2a
GTP binding, GTPase activity, nucleotide binding, protein binding
MPEG1_MOUSE
Macrophage-expressed gene 1 protein
RBX1_MOUSE
E3 ubiquitin-protein ligase RBX1
NEDD8 transferase activity, cullin family protein binding, eukaryotic initiation factor 4E binding, ligase activity, protein complex binding, ubiquitin protein ligase activity, ubiquitin protein ligase binding, ubiquitin-ubiquitin ligase activity, zinc ion binding
VPS16_MOUSE
Vacuolar protein sorting-associated protein 16 homolog
Actin binding
PKHO2_MOUSE
Pleckstrin homology domain-containing family O member 2
Calcium-dependent protein serine/threonine phosphatase activity, calmodulin binding, calmodulin-dependent protein phosphatase activity, drug binding, enzyme binding, hydrolase activity, metal ion binding, protein dimerization activity, protein heterodimerization activity
VAPB_MOUSE
Vesicle-associated membrane protein-associated protein B
FFAT motif binding, beta-tubulin binding, cadherin binding involved in cell-cell adhesion, enzyme binding, microtubule binding, protein heterodimerization activity, protein homodimerization activity
TBL1R_MOUSE
F-box-like/WD repeat-containing protein TBL1XR1
DNA binding, beta-catenin binding, histone binding, protein N-terminus binding, protein binding, transcription corepressor activity, transcription regulatory region DNA binding
RAB35_MOUSE
Ras-related protein Rab-35
GDP binding, GTP binding, GTPase activity, nucleotide binding, phosphatidylinositol-4,5-bisphosphate binding, protein binding
BID_MOUSE
BH3-interacting domain death agonist
Protein heterodimerization activity, ubiquitin protein ligase binding
Cytokine activity, interleukin-1 Type I receptor antagonist activity, interleukin-1 Type II receptor antagonist activity, interleukin-1, Type I receptor binding, interleukin-1, Type II receptor binding
PDXK_MOUSE
Pyridoxal kinase
ATP binding, kinase activity, lithium ion binding, magnesium ion binding, nucleotide binding, potassium ion binding, protein homodimerization activity, pyridoxal kinase activity, pyridoxal phosphate binding, sodium ion binding, zinc ion binding
TRI25_MOUSE
E3 ubiquitin/ISG15 ligase TRIM25
RNA binding, acid-amino acid ligase activity, cadherin binding involved in cell-cell adhesion, ligase activity, metal ion binding, ubiquitin protein ligase activity involved in ERAD pathway, ubiquitin-protein transferase activity, zinc ion binding
VATD_MOUSE
V-type proton ATPase subunit D
ATPase activity, coupled to transmembrane movement of substances
IL1AP_MOUSE
Interleukin-1 receptor accessory protein
Interleukin-1 receptor activity, interleukin-33 receptor activity, protein tyrosine kinase binding, signal transducer activity
SFXN1_MOUSE
Sideroflexin-1
Ion transmembrane transporter activity
EEA1_MOUSE
Early endosome antigen 1
1-Phosphatidylinositol binding, GTP-dependent protein binding, metal ion binding, protein homodimerization activity
CBR2_MOUSE
Carbonyl reductase [NADPH] 2
Carbonyl reductase (NADPH) activity, oxidoreductase activity, protein binding, protein self-association
Glycogenin glucosyltransferase activity, metal ion binding, transferase activity, transferase activity, transferring glycosyl groups
BPNT1_MOUSE
3(2),5-Bisphosphate nucleotidase 1
3(2),5-Bisphosphate nucleotidase activity, hydrolase activity, magnesium ion binding, metal ion binding
IFM2_MOUSE
Interferon-induced transmembrane protein 2
Molecular function
PFD6_MOUSE
Prefoldin subunit 6
Chaperone binding, unfolded protein binding
COMD8_MOUSE
COMM domain-containing protein 8
Molecular function
S10AD_MOUSE
Protein S100-A13
RAGE receptor binding, calcium ion binding, copper ion binding, fibroblast growth factor binding, lipid binding, metal ion binding, protein homodimerization activity, zinc ion binding
Oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, phenanthrene-9,10-epoxide hydrolase activity
BST2_MOUSE
Bone marrow stromal antigen 2
RNA binding, metalloendopeptidase inhibitor activity, protein homodimerization activity, signal transducer activity
CASP1_MOUSE
Caspase-1
Cysteine-type endopeptidase activity, cysteine-type endopeptidase activity involved in apoptotic process, cysteine-type peptidase activity, protein binding
CD180_MOUSE
CD180 antigen
Receptor activity
CK054_MOUSE
Ester hydrolase C11orf54 homolog
Hydrolase activity, acting on ester bonds, metal ion binding, zinc ion binding
COX7C_MOUSE
Cytochrome c oxidase subunit 7C, mitochondrial
Cytochrome c oxidase activity
CPSF7_MOUSE
Cleavage and polyadenylation specificity factor subunit 7
2 iron, 2 sulfur cluster binding, metal ion binding, oxidoreductase activity, acting on diphenols and related substances as donors, protein complex binding, ubiquinol-cytochrome c reductase activity
CD97_MOUSE
CD97 antigen
G-protein coupled receptor activity, calcium ion binding, signal transducer activity
WDR26_MOUSE
WD repeat-containing protein 26
Molecular function
XIRP2_MOUSE
Xin actin-binding repeat-containing protein 2
Actin binding, alpha-actinin binding, protein binding, zinc ion binding
ATP binding, GDP binding, GTP binding, ligase activity, metal ion binding, nucleotide binding, protein heterodimerization activity, succinate-CoA ligase (GDP-forming) activity, succinate-semialdehyde dehydrogenase (NAD+) activity
Cleavage and polyadenylation specificity factor subunit 6
RNA binding, mRNA binding, nucleotide binding
CRK_MOUSE
Adapter molecule crk
SH2 domain binding, SH3/SH2 adaptor activity, enzyme binding, ephrin receptor binding, protein binding, bridging, protein phosphorylated amino acid binding
CTBP2_MOUSE
C-terminal-binding protein 2
NAD binding, chromatin binding, oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, protein homodimerization activity, retinoic acid receptor binding, transcription coactivator activity, transcription corepressor activity
Isomerase activity, mannose-6-phosphate isomerase activity, zinc ion binding
NAGA_MOUSE
N-Acetylglucosamine-6-phosphate deacetylase
N-Acetylglucosamine-6-phosphate deacetylase activity, hydrolase activity, metal ion binding
NDUS4_MOUSE
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
NADH dehydrogenase (ubiquinone) activity
NDUS5_MOUSE
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
Molecular function
NHLC3_MOUSE
NHL repeat-containing protein 3
Molecular function
NU160_MOUSE
Nuclear pore complex protein Nup160
Nucleocytoplasmic transporter activity
NUP50_MOUSE
Nuclear pore complex protein Nup50
Ran GTPase binding
OAS1A_MOUSE
2-5-Oligoadenylate synthase 1A
2-5-Oligoadenylate synthetase activity, ATP binding, double-stranded RNA binding, metal ion binding, nucleotide binding, protein binding, transferase activity
Hsp90 protein binding, Lys48-specific deubiquitinase activity, metal ion binding, thiol-dependent ubiquitin-specific protease activity, ubiquitin protein ligase binding
Disintegrin and metalloproteinase domain-containing protein 10
SH2 domain binding, SH3 domain binding, hydrolase activity, metal ion binding, metalloendopeptidase activity, metallopeptidase activity, protein binding, protein homodimerization activity, protein kinase binding
KCT2_MOUSE
Keratinocyte-associated transmembrane protein 2
Molecular function
NDRG2_MOUSE
Protein NDRG2
YIF1B_MOUSE
Protein YIF1B
Molecular function
TIM8B_MOUSE
Mitochondrial import inner membrane translocase subunit Tim8 B
Metal ion binding
DJC24_MOUSE
DnaJ homolog subfamily C member 24
ATPase activator activity, ferrous iron binding, zinc ion binding
VWA8_MOUSE
von Willebrand factor A domain-containing protein 8
ATP binding, ATPase activity, nucleotide binding
FEN1_MOUSE
Flap endonuclease 1
5-3 exonuclease activity, 5-flap endonuclease activity, DNA binding, RNA-DNA hybrid ribonuclease activity, catalytic activity, exonuclease activity, flap endonuclease activity, magnesium ion binding, manganese ion binding
TPD54_MOUSE
Tumor protein D54
RNA binding
MCL1_MOUSE
Induced myeloid leukemia cell differentiation protein Mcl-1 homolog
BH3 domain binding, protein heterodimerization activity, protein homodimerization activity
PCBP4_MOUSE
Poly(rC)-binding protein 4
DNA binding, RNA binding, mRNA 3 -UTR binding
GCR_MOUSE
Glucocorticoid receptor
RNA polymerase II core promoter proximal region sequence-specific DNA binding, glucocorticoid-activated RNA polymerase II transcription factor binding transcription factor activity, lipid binding, metal ion binding, protein complex binding, protein dimerization activity, sequence-specific DNA binding, steroid hormone binding, transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding, zinc ion binding
FMN binding, dihydroorotate dehydrogenase activity, drug binding, ubiquinone binding
CTL1_MOUSE
Choline transporter-like protein 1
Choline transmembrane transporter activity
LY6C1_MOUSE
Lymphocyte antigen 6C1
OTU6B_MOUSE
OTU domain-containing protein 6B
Thiol-dependent ubiquitinyl hydrolase activity
NECT2_MOUSE
Nectin-2
Cell adhesion molecule binding, identical protein binding, protein heterodimerization activity, protein homodimerization activity, receptor activity, receptor binding
TTYH2_MOUSE
Protein tweety homolog 2
Chloride channel activity, molecular function
LMOD1_MOUSE
Leiomodin-1
Actin binding, tropomyosin binding
UD16_MOUSE
UDP-glucuronosyltransferase 1-6
Glucuronosyltransferase activity, protein heterodimerization activity, protein homodimerization activity, transferase activity, transferring hexosyl groups
MYL6B_MOUSE
Myosin light chain 6B
Calcium ion binding, motor activity, structural constituent of muscle