Table of Contents
Sequencing
Volume 2010, Article ID 782465, 12 pages
http://dx.doi.org/10.1155/2010/782465
Research Article

Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads

Department of Biology, Centre for Ecological and Evolutionary Synthesis (CEES), University of Oslo, P.O. Box 1066 Blindern, 0316 Oslo, Norway

Received 26 May 2009; Revised 28 September 2009; Accepted 5 November 2009

Academic Editor: Nick Loman

Copyright © 2010 Alexander J. Nederbragt et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [6 citations]

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  • Tove M. Gabrielsen, Marianne A. Minge, Mari Espelund, Ave Tooming-Klunderud, Vishwanath Patil, Alexander J. Nederbragt, Christian Otis, Monique Turmel, Kamran Shalchian-Tabrizi, Claude Lemieux, and Kjetill S. Jakobsen, “Genome Evolution of a Tertiary Dinoflagellate Plastid,” Plos One, vol. 6, no. 4, 2011. View at Publisher · View at Google Scholar
  • Florian Leese, Philipp Brand, Andrey Rozenberg, Christoph Mayer, Shobhit Agrawal, Johannes Dambach, Lars Dietz, Jana S. Doemel, William P. Goodall-Copstake, Christoph Held, Jennifer A. Jackson, Kathrin P. Lampert, Katrin Linse, Jan N. Macher, Jennifer Nolzen, Michael J. Raupach, Nicole T. Rivera, Christoph D. Schubart, Sebastian Striewski, Ralph Tollrian, and Chester J. Sands, “Exploring Pandora's Box: Potential and Pitfalls of Low Coverage Genome Surveys for Evolutionary Biology,” Plos One, vol. 7, no. 11, 2012. View at Publisher · View at Google Scholar
  • Ave Tooming-Klunderud, Hanne Sogge, Trine Ballestad Rounge, Alexander J. Nederbragt, Karin Lagesen, Gernot Gloeckner, Paul K. Hayes, Thomas Rohrlack, and Kjetill S. Jakobsen, “From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains,” Applied and Environmental Microbiology, vol. 79, no. 21, pp. 6803–6812, 2013. View at Publisher · View at Google Scholar
  • A. R. J. Lima, A. S. Siqueira, B. G. S. dos Santos, F. D. F. da Silva, D. T. Inada, C. P. Lima, J. F. Cardoso, J. L. S. G. Vianez-Junior, M. R. T. Nunes, and E. C. Goncalves, “Draft Genome Sequence of Rhodobacter sp. Strain CACIA 14H1, a Heterotrophic Bacterium Obtained from a Nonaxenic Culture of a Cyanobium Species,” Genome Announcements, vol. 2, no. 1, 2014. View at Publisher · View at Google Scholar
  • A. R. J. Lima, A. S. Siqueira, B. G. S. dos Santos, F. D. F. da Silva, C. P. Lima, J. F. Cardoso, J. L. S. G. Vianez-Junior, M. R. T. Nunes, and E. C. Goncalves, “Draft Genome Sequence of Blastomonas sp. Strain CACIA 14H2, a Heterotrophic Bacterium Associated with Cyanobacteria,” Genome Announcements, vol. 2, no. 1, 2014. View at Publisher · View at Google Scholar
  • Karina Heck, Gabriela Silva Machineski, Danillo Oliveira Alvarenga, Marcelo Gomes Marçal Vieira Vaz, Alessandro de Mello Varani, and Marli Fátima Fiore, “Evaluating methods for purifying cyanobacterial cultures by qPCR and high-throughput Illumina sequencing,” Journal of Microbiological Methods, 2016. View at Publisher · View at Google Scholar