Research Article
Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection
Table 1
Details of the alignments returned by other tools—columns 2 through 4—and our method—columns 5 through 8. Best scores are in italics.
| | CMO | PAUL | TMAlign | AC | BD | AD | BC |
| Number of aligned residues | 148 | 148 | 79 | 72 | 70 | 66 | 64 | % of aligned residues | 100 | 100 | 53.4 | 48.7 | 47.3 | 44.6 | 43.2 | | 14.781 | 14.781 | 2.935 | 2.048 | 1.731 | 1.592 | 2.210 | | 10.838 | 10.838 | 2.627 | 1.797 | 1.475 | 1.414 | 1.770 |
TM-score | 0.161 | 0.161 | 0.422 | 0.411 | 0.422 | 0.405 | 0.358 |
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