Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection

Table 1

Details of the alignments returned by other tools—columns 2 through 4—and our method—columns 5 through 8. Best scores are in italics.

	CMO	PAUL	TMAlign	AC	BD	AD	BC
Number of aligned residues	148	148	79	72	70	66	64
% of aligned residues	100	100	53.4	48.7	47.3	44.6	43.2
	14.781	14.781	2.935	2.048	1.731	1.592	2.210
	10.838	10.838	2.627	1.797	1.475	1.414	1.770
TM-score	0.161	0.161	0.422	0.411	0.422	0.405	0.358