Table of Contents Author Guidelines Submit a Manuscript
The Scientific World Journal
Volume 2012 (2012), Article ID 365104, 10 pages
http://dx.doi.org/10.1100/2012/365104
Research Article

Mixed Sequence Reader: A Program for Analyzing DNA Sequences with Heterozygous Base Calling

1Department of Computer Science, National Tsing Hua University, Hsin-Chu, Taiwan
2Graduate Institutes of Clinical Medical Sciences, Chang Gung University, No. 259 Wen-Hwa, 1st Road, Kwei-Shan, Tao-Yuan 333, Taiwan
3Institute of Statistical Science, Academia Sinica, Taipei, Taiwan
4Department of Biotechnology, Ming Chuan University, Tao-Yuan, Taiwan
5Department of Obstetrics and Gynecology, Lin-Kou Medical Center, Chang Gung Memorial Hospital, Chang Gung University, Fu-Hsing Street, Kwei-Shan, Tao-Yuan 333, Taiwan
6Genomic Medicine Research Core Laboratory, Chang Gung Memorial Hospital, No. 5, Fu-Hsing Street, Kwei-Shan, Tao-Yuan 333, Taiwan

Received 25 February 2012; Accepted 1 April 2012

Academic Editors: A. Amorim, P.-O. Angrand, and H. Yang

Copyright © 2012 Chun-Tien Chang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [18 citations]

The following is the list of published articles that have cited the current article.

  • Yi-Chun Chen, Yun-Shien Lee, Chen-Chang Shih, Tony Wu, and Chiung-Mei Chen, “Mutations of proline-rich transmembrane protein-2 and paroxysmal kinesigenic dyskinesia in Taiwan,” Movement Disorders, 2013. View at Publisher · View at Google Scholar
  • Marvin W. Fawley, Karen P. Fawley, and Eberhard Hegewald, “ Desmodesmus baconii (Chlorophyta), a new species with double rows of arcuate spines ,” Phycologia, vol. 52, no. 6, pp. 565–572, 2013. View at Publisher · View at Google Scholar
  • Alina Avanesyan, “Plant Dna Detection From Grasshopper Guts: A Step-By-Step Protocol, From Tissue Preparation To Obtaining Plant Dna Sequences,” Applications in Plant Sciences, vol. 2, no. 2, 2014. View at Publisher · View at Google Scholar
  • Pierre-Francois Roux, Morgane Boutin, Colette Desert, Anis Djari, Diane Esquerre, Christophe Klopp, Sandrine Lagarrigue, and Olivier Demeure, “Re-Sequencing Data for Refining Candidate Genes and Polymorphisms in QTL Regions Affecting Adiposity in Chicken,” Plos One, vol. 9, no. 10, 2014. View at Publisher · View at Google Scholar
  • Pierre-Francois Roux, Simon Boitard, Yuna Blum, Brian Parks, Alexandra Montagner, Etienne Mouisel, Anis Djari, Diane Esquerre, Colette Desert, Morgane Boutin, Sophie Leroux, Frederic Lecerf, Elisabeth Le Bihan-Duval, Christophe Klopp, Bertrand Servin, Frederique Pitel, Michel Jean Duclos, Herve Guillou, Aldons J. Lusis, Olivier Demeure, and Sandrine Lagarrigue, “Combined QTL and Selective Sweep Mappings with Coding SNP Annotation and cis-eQTL Analysis Revealed PARK2 and JAG2 as New Candidate Genes for Adiposit,” G3-Genes Genomes Genetics, vol. 5, no. 4, pp. 517–529, 2015. View at Publisher · View at Google Scholar
  • Larson Boundenga, Benjamin Ollomo, Virginie Rougeron, Lauriane Yacka Mouele, Bertrand Mve-Ondo, Lucrece M. Delicat-Loembet, Nancy Diamella Moukodoum, Alain Prince Okouga, Celine Arnathau, Eric Elguero, Patrick Durand, Florian Liegeois, Vanina Boue, Peggy Motsch, Guillaume Le Flohic, Alphonse Ndoungouet, Christophe Paupy, Cheikh Tidiane Ba, Francois Renaud, and Franck Prugnolle, “Diversity of malaria parasites in great apes in Gabon,” Malaria Journal, vol. 14, 2015. View at Publisher · View at Google Scholar
  • Patrick S. McGrath, Carey L. Watson, Cameron Ingram, Michael A. Helmrath, and James M. Wells, “The Basic Helix-Loop-Helix Transcription Factor NEUROG3 Is Required for Development of the Human Endocrine Pancreas,” Diabetes, vol. 64, no. 7, pp. 2497–2505, 2015. View at Publisher · View at Google Scholar
  • Alina Avanesyan, and Theresa M. Culley, “ Feeding preferences of Melanoplus femurrubrum grasshoppers on native and exotic grasses: behavioral and molecular approaches ,” Entomologia Experimentalis et Applicata, 2015. View at Publisher · View at Google Scholar
  • Renliang Huang, Junping Yin, Yan Chen, Fengyuan Deng, Juan Chen, Xing Gao, Zuguo Liu, Xinhua Yu, and Junfeng Zheng, “The amino acid variation within the binding pocket 7 and 9a of HLA-DRB1 molecules are associated with primary Sjögren's syndrome,” Journal of Autoimmunity, 2015. View at Publisher · View at Google Scholar
  • Chia-Hung Lin, Yun-Shien Lee, Yu-Yao Huang, Sheng-Hwu Hsieh, Zih-Syuan Chen, and Chi-Neu Tsai, “Polymorphisms of GLP-1 Receptor Gene and Response to GLP-1 Analogue in Patients with Poorly Controlled Type 2 Diabetes,” Journal of Diabetes Research, vol. 2015, pp. 1–10, 2015. View at Publisher · View at Google Scholar
  • Horacio Schneider, Raimundo Da Silva, Iracilda Sampaio, and Grazielle Gomes, “Lack of spatial subdivision for the snapper lutjanus purpureus (lutjanidae-perciformes) from southwest atlantic based on multi-locus analyses,” PLoS ONE, vol. 11, no. 8, 2016. View at Publisher · View at Google Scholar
  • Jonas Dehairs, Ali Talebi, Yacine Cherifi, and Johannes V. Swinnen, “CRISP-ID: Decoding CRISPR mediated indels by Sanger sequencing,” Scientific Reports, vol. 6, 2016. View at Publisher · View at Google Scholar
  • Maryam Karimi, Reza Ghasemikhah, Hadi Mirahmadi, Adel Spotin, Soheila Rouhani, and Seyyed Javad Seyyed Tabaei, “Discrimination of Mixed Infections of Echinococcus Species Based on in Silico Sequence Analysis: A New Way of Reflecting Overlapped Strains in Indigenous Areas,” Archives of Clinical Infectious Diseases, vol. InPress, no. InPress, 2017. View at Publisher · View at Google Scholar
  • Virginie Bubien, Françoise Bonnet, Jennifer Dupiot-Chiron, Emmanuelle Barouk-Simonet, Natalie Jones, Aurélien de Reynies, Gaëtan MacGrogan, Nicolas Sevenet, Eric Letouzé, and Michel Longy, “ Combined tumor genomic profiling and exome sequencing in a breast cancer family implicates ATM in tumorigenesis: A proof of principle study ,” Genes, Chromosomes and Cancer, 2017. View at Publisher · View at Google Scholar
  • Pedro M. Madeira, Rosa M. Chefaoui, Regina L. Cunha, Francisco Moreira, Susana Dias, Gonçalo Calado, and Rita Castilho, “High unexpected genetic diversity of a narrow endemic terrestrial mollusc,” PeerJ, vol. 5, pp. e3069, 2017. View at Publisher · View at Google Scholar
  • Raimundo Da Silva, Danillo Silva, Ivana Veneza, Iracilda Sampaio, Horacio Schneider, and Grazielle Gomes, “Development of EPIC-PCR Markers for Lutjanus purpureus (Lutjanidae-Perciformes) and their Potential Applicability in Population Analyses,” Anais da Academia Brasileira de Ci?ncias, no. 0, 2017. View at Publisher · View at Google Scholar
  • Henrik Gårdsvoll, Kamilla Ellermann Jensen, Petra Hamerlik, Lars Henning Engelholm, Niels Behrendt, Sander Maarten Van Putten, Maria Carlsén Melander, Signe Ziir Ingvarsen, Christoffer Fagernæs Nielsen, Ida Katrine Lund, Kirstine Sandal Nørregaard, Henrik Jessen Jürgensen, Kristian Reckzeh, and Kristine Rothaus Christensen, “The collagen receptor uPARAP/Endo180 as a novel target for antibody-drug conjugate mediated treatment of mesenchymal and leukemic cancers,” Oncotarget, vol. 8, no. 27, pp. 44605–44624, 2017. View at Publisher · View at Google Scholar
  • Parm Viktor von Oheimb, Katharina C. M. von Oheimb, Takahiro Hirano, Tu Van Do, Hao Van Luong, Jonathan Ablett, Sang Van Pham, and Fred Naggs, “Competition matters: Determining the drivers of land snail community assembly among limestone karst areas in northern Vietnam,” Ecology and Evolution, 2018. View at Publisher · View at Google Scholar