Hierarchical Modular Structure Identification with Its Applications in Gene Coexpression Networks

Table 2

GO enrichment analysis results of gene modules on the upper level.

Module	𝑀-size	Enriched GO category	𝑃 value	𝐺-size	Overlap
𝑀2,𝑀8	335	Ribonucleoprotein complex biogenesis	4.02×10^−66	149	148
𝑀1,𝑀2,𝑀8	525	Ribonucleoprotein complex biogenesis	1.33×10^−29	149	148
𝑀1,𝑀2,𝑀4,𝑀8	587	Ribonucleoprotein complex biogenesis	6.04×10^−23	149	149
𝑀3,𝑀7	154	Organic acid biosynthetic process	9.22×10^−40	89	71
𝑀1,𝑀2,𝑀3,𝑀4	741	Cellular component biogenesis	4.01×10^−6	175	175
𝑀7,𝑀8		Cellular component biogenesis at cellular level	1.84×10^−5	156	156
		Ribonucleoprotein complex biogenesis	3.19×10^−5	149	149
		Ribosome biogenesis	3.44×10^−5	148	148
𝑀6,𝑀10	24	Steroid biosynthetic process	2.36×10^−19	13	12