Research Article
A Local Genetic Algorithm for the Identification of Condition-Specific MicroRNA-Gene Modules
Algorithm 1
Pseudocode for module identification.
Input: Parameter list of the genetic algorithm | Parameter list of local search | Score matrix ScoreM. | Number of Modules ModN | Output: Module chromosomes M | Formal steps: | (1) Set | (2) while m != ModN do | (3) Perform the genetic algorithm to identify co-expressed gene set and save to Gco | (4) Apply the local search to Gco and save solution to M | (5) Update PCC matrix | (6) end while | (7) Return M |
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