The Scientific World Journal / 2013 / Article / Tab 1

Review Article

RNA Editing and Drug Discovery for Cancer Therapy

Table 1

RNA editing bioinformatics resources.

ToolsFunctions (Web sites)

dbRES [36]A database for annotated RNA editing sites. (http://bioinfo.au.tsinghua.edu.cn/dbRES)

DARNED [37, 38]A database of RNA editing in humans and model organisms with Wikipedia. (http://darned.ucc.ie)

miR-EdiTar [39]A database of predicted A-to-I edited miRNA target sites. (http://microrna.osumc.edu/mireditar)

ExpEdit [40]A webserver for human RNA editing in RNA-Seq experiments. (http://www.caspur.it/ExpEdit/)

RNA-eXpress [41]An annotation tool for novel transcript features in RNA-Seq data including RNA editing and others. (http://www.rnaexpress.org)

GOBASE [42]An organelle genome database with an interface for RNA editing data and others using multiple alignments. (http://gobase.bcm.umontreal.ca/)

REDIdb [43]A database for organellar RNA editing sites. (http://biologia.unical.it/py_script/REDIdb)

PREPACT 2.0 [44]Predicting RNA editing in organelle genome sequences with multiple references and curated RNA editing annotation. (http://www.prepact.de)

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