The Scientific World Journal / 2013 / Article / Tab 2

Research Article

Evaluation of Allele Frequency Estimation Using Pooled Sequencing Data Simulation

Table 2

Statistics for doing 10,000 simulations at different MAFs.

MAFMin. 1st Qu.MedianMean 3rd Qu.Max.Var.Relative RMSE

0.50.00000.00360.00490.00500.00640.01620.00000.5037
10.00000.00750.00980.01000.01240.02640.00000.3552
50.02560.04480.05000.05000.05510.07950.00010.1540
100.06150.09280.09990.10000.10710.14010.00010.1070
200.14440.19040.20000.20010.20980.25580.00020.0716
300.24490.28890.29970.29980.31060.36190.00030.0537
400.33970.38790.39980.40000.41180.47070.00030.0442
500.43480.48770.50000.49980.51160.56750.00030.0359