An Empirical Study of Different Approaches for Protein Classification

Table 7

Comparison among ensembles and best stand-alone descriptors in terms of AUC in 2 class problems.

AUC	Datasets
Protein representation	DNA	HU	HI	GP	AD	VI1	VI2
PSSM(PP)	95.5	81.2	94.8	99.8	87.7	86.2	87.2
PSSM(SAN)	95.2	76.4	95.7	99.7	82.7	87.3	85.7
AAS(AC)	92.6	71.8	95.9	99.1	80.9	90.0	76.4
FUS1	97.2	82.0	98.4	99.9	88.2	89.0	88.7
FUS2	97.3	—	—	—	—	—	—