In Silico Approach towards Designing Virtual Oligopeptides for HRSV

Table 3

Shuffled amino acid residues from oligopeptides.

PGKYKLAVSEK	KYKLAPGVSEK, GEKKLVEAPKS, LKYKGPKESVA, YLASEKVKKGP, EKGSAVYGLPK, SPYVEKKAGKL
PGKFYVSSGATTFPAVYL	GPKFVYSGSTATPAFYVL, FGKPSVYSTAGTPAFVYL,; SSGAYVTTFPKFAVYGLP, PPGVAKYLVSSGATTFFY,; SVYGASVAPKYPLGTFTF, TTFPKFAAYVPLGYVGSS
QVGFSSTAMWNKTFDVSGATQ	WNKTAMTFDFSSVSGQVGATQ, NKATATGVQGMTDFGSVSSQW,; MTFDSGSVSWQGQVGTATANK, MTNKATFDATSGGVSVQGSWQ,; QVGQTAFSSGSVTAMWKTFDN, SGATQKTDFVQVGFSSNWMAT
QTAMRMIFTALTSPS	MIFTALTAMRSPSQT, TAMRPSSTALQTMIF, FMIQTLTSASPRAMT,; MIFQLTTSSAPARTM, SSTTPALQRAFIMMT, TSMSMTITFPAALQR
SGVQPDAPSNDSKDT	VGQPADPNSDSKDTS, PDAPSQNDGKDSSTV, QVPGSAPSDNDSKTD,; DKGVSDQPSNDAPST, PSANDDPSQKVDTGS, SNDSGVSDTQPDTAP
PSTLSVSSGTVYEKHEGLS	VSSGTEKHEGLSPSTLSYV, KEHGLSSPLTVSGSSTVYE, GSVSSTLPSLGEHKEVYTS, SVSSLTPSKGEHLSGVYTE, YHTGSSVSLTSPSLGEVKE, SSSTPELHSGEYTGVSKVL
KREAKQEE	AEKREKQE, QEKRAEKE, EEKREKQA, EKQEREAK, KKREAQEE,; AKREEEQK, EKEQKRAE, KEAKEREQ
PGPTVFPAVLY	PPVAYLTPFVG, LPTPFGVYVAP, FVPTGVYLPPA, AVPTGYPFVLP,; PTFVGYLVAPP, GTYPFVAVLPP

All oligopeptides were shuffled and possible residues were generated randomly.