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The Scientific World Journal
Volume 2015, Article ID 137076, 11 pages
Research Article

freeQuant: A Mass Spectrometry Label-Free Quantification Software Tool for Complex Proteome Analysis

1Department of Biomedical Engineering, Key Laboratory for Biomedical Engineering of Ministry of Education, Zhejiang University, Hangzhou 310027, China
2General Hospital of Ningxia Medical University, Yinchuan 750004, China

Received 8 February 2015; Revised 20 September 2015; Accepted 5 October 2015

Academic Editor: Huiru Zheng

Copyright © 2015 Ning Deng et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

Tables S1, S2, and S3 list the top 10 most abundant proteins in the human heart mitochondrial dataset, the mouse heart mitochondrial dataset, and the mouse liver mitochondrial dataset respectively. Table S4 lists the top 30 most interactions proteins in the mitochondrial interactome.

Figure S1 shows the functional modules of freeQuant. Figure S2 shows the workflow of mitochondrial data acquisition and preparation in this study. Figure S3 shows the percentage of proteins with shared peptides in four groups of mouse heart mitochondrial proteome dataset.

  1. Supplementary Material