International Journal of Genomics

Research Article

A Chromosomal-Level Genome of Dermatophagoides farinae, a Common Allergenic Mite Species

Table 1

Assembly statistics of the Dermatophagoides farinae genome.


	D. farinae 2.0 (GenBank no. GCA_000767015.2)		UMICH_USM_1.1 (GenBank no. GCA_002085665.2)		ASM2080927v1 (GenBank no. GCA_020809275.1)		Our work (GenBank no. GCA_024713945.1)
	Scaffold	Contig	Scaffold	Contig	Scaffold	Contig	Scaffold	Contig

Total number	10	108	1704	1720	10	10	21	22
Total length (bp)	60394945	60120219	91891712	91891214	58776842	58776842	62428314	62428214
Gap number (bp)	274781	0	589	0	0	0	100	0
N50 length (bp)	8981490	2293841	192501	188869	9265486	9265486	7117990	5241854
N90 length (bp)	4366617	606759	20380	19337	3602211	3602211	3348946	3348946
Maximum length (bp)	16911843	3995946	1740722	1740722	13798924	13798924	9172953	9172953
Minimum length (bp)	331559	202	706	706	613882	613882	89727	89727
GC content (%)	30.58	30.58	30.49	30.49	30.38	30.38	30.57	30.57
BUSCO (v5.3.2, arachnida_odb10)	C: 91.4% (S: 89.4%, D: 2.0%), F: 4.0%, M: 4.6%, : 2934		C: 92.4% (S: 72.7%, D: 19.7%), F: 3.5%, M: 4.1%, : 2934		C: 91.7% (S: 90.4%, D: 1.3%), F: 3.7%, M: 4.6%, : 2934		C: 92.1% (S: 90.9%, D: 1.2%), F: 3.6%, M: 4.3%, : 2934
Sequencing technology	Oxford Nanopore GridION; PacBio Sequel		PacBio; Illumina HiSeq		Nanopore		PacBio; Illumina HiSeq; Hi-C
Assembly method	Flye v. 2.6		HGAP3 v. 2013		WTDBG v. 1.2.8		FALCON v. 0.3.0; WTDBG2 v. 2.5; Flye v. 2.0
Genome coverage	431.0x		100.0x		396.0x		265.0x
Assembly level	Scaffold		Scaffold		Contig		Chromosome
Assembly release date	Feb 2022		Apr 2017		Nov 2021		Aug 2022

C: complete BUSCOs; S: complete and single-copy; D: complete and duplicated BUSCOs; F: fragmented BUSCOs; M: missing BUSCOs.