Research Article
Pangenome Analysis of Helicobacter pylori Isolates from Selected Areas of Africa Indicated Diverse Antibiotic Resistance and Virulence Genes
Table 1
Averages of genomic features of H. pylori and their implications.
| Genome feature | Average | Implication | References |
| Contigs | 61.5 | Good number of overlapping clones | [28] | G-size | 1627587.8 | More genes, more and longer introns, and more transposable elements | [29] | GC content | 38.9 | Unstable genome with low melting point | [30] | Contig L50 | 8.1 | Total number of chromosomes, organelle genomes, and plasmids in the assembly | [31] | Contig N50 | 80187.7 | Assess the contiguity of an assembly | [32] | tRNA | 35.5 | Normal | [33] | rRNA | 2.4 | Overloaded the column | [34] | CDS | 1660.1 | Corresponds to amino acids in a protein | [35] | Coarse consist | 99.8 | The genome qualities are good | [36] | Fine consist | 99.0 | The genome qualities are good | [36] | CheckM contamination | 2.3 | The genome qualities are good | [37] | CheckM completeness | 99.9 | The genome qualities are good | [37] |
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