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BioMed Research International
Volume 2013 (2013), Article ID 285063, 7 pages
MicroRNA-Mediated Regulation in Biological Systems with Oscillatory Behavior
1Department of Mathematics, Shanghai University, Shanghai 200444, China
2Institute of Systems Biology, Shanghai University, Shanghai 200444, China
Received 30 April 2013; Revised 3 June 2013; Accepted 4 June 2013
Academic Editor: Tao Huang
Copyright © 2013 Zhiyong Zhang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
- A. Chakrabarty, S. Tranguch, T. Daikoku, K. Jensen, H. Furneaux, and S. K. Dey, “MicroRNA regulation of cyclooxygenase-2 during embryo implantation,” Proceedings of the National Academy of Sciences of the United States of America, vol. 104, no. 38, pp. 15144–15149, 2007.
- E. Wienholds, W. P. Kloosterman, E. Miska et al., “Cell biology: microRNA expression in zebrafish embryonic development,” Science, vol. 309, no. 5732, pp. 310–311, 2005.
- L. He, J. M. Thomson, M. T. Hemann et al., “A microRNA polycistron as a potential human oncogene,” Nature, vol. 435, no. 7043, pp. 828–833, 2005.
- A. M. Krichevsky, K.-C. Sonntag, O. Isacson, and K. S. Kosik, “Specific MicroRNAs modulate embryonic stem cell-derived neurogenesis,” Stem Cells, vol. 24, no. 4, pp. 857–864, 2006.
- J. Takamizawa, H. Konishi, K. Yanagisawa et al., “Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival,” Cancer Research, vol. 64, no. 11, pp. 3753–3756, 2004.
- M. Z. Michael, S. M. O'Connor, N. G. Van Holst Pellekaan, G. P. Young, and R. J. James, “Reduced accumulation of specific microRNAs in colorectal neoplasia,” Molecular Cancer Research, vol. 1, no. 12, pp. 882–891, 2003.
- H. Tagawa and M. Seto, “A microRNA cluster as a target of genomic amplification in malignant lymphoma ,” Leukemia, vol. 19, no. 11, pp. 2013–2016, 2005.
- R. Schickel, B. Boyerinas, S.-M. Park, and M. E. Peter, “MicroRNAs: key players in the immune system, differentiation, tumorigenesis and cell death,” Oncogene, vol. 27, no. 45, pp. 5959–5974, 2008.
- H.-W. Hwang and J. T. Mendell, “MicroRNAs in cell proliferation, cell death, and tumorigenesis,” British Journal of Cancer, vol. 94, no. 6, pp. 776–780, 2006.
- H. R. Shcherbata, S. Hatfield, E. J. Ward, S. Reynolds, K. A. Fischer, and H. Ruohola-Baker, “The MicroRNA pathway plays a regulatory role in stem cell division,” Cell Cycle, vol. 5, no. 2, pp. 172–175, 2006.
- P. P. Medina and F. J. Slack, “microRNAs and cancer: an overview,” Cell Cycle, vol. 7, no. 16, pp. 2485–2492, 2008.
- M. Carleton, M. A. Cleary, and P. S. Linsley, “MicroRNAs and cell cycle regulation,” Cell Cycle, vol. 6, no. 17, pp. 2127–2132, 2007.
- S. A. Georges, M. C. Biery, S.-Y. Kim et al., “Coordinated regulation of cell cycle transcripts by p53-inducible microRNAs, miR-192 and miR-215,” Cancer Research, vol. 68, no. 24, pp. 10105–10112, 2008.
- S. D. Hatfield, H. R. Shcherbata, K. A. Fischer, K. Nakahara, R. W. Carthew, and H. Ruohola-Baker, “Stem cell division is regulated by the microRNA pathway,” Nature, vol. 435, no. 7044, pp. 974–978, 2005.
- J. A. Pulikkan, V. Dengler, P. S. Peramangalam et al., “Cell-cycle regulator E2F1 and microRNA-223 comprise an autoregulatory negative feedback loop in acute myeloid leukemia,” Blood, vol. 115, no. 9, pp. 1768–1778, 2010.
- Q. Liu, H. Fu, F. Sun et al., “miR-16 family induces cell cycle arrest by regulating multiple cell cycle genes,” Nucleic Acids Research, vol. 36, no. 16, pp. 5391–5404, 2008.
- M. J. Bueno, I. P. De Castro, and M. Malumbres, “Control of cell proliferation pathways by microRNAs,” Cell Cycle, vol. 7, no. 20, pp. 3143–3148, 2008.
- R. R. Chivukula and J. T. Mendell, “Circular reasoning: microRNAs and cell-cycle control,” Trends in Biochemical Sciences, vol. 33, no. 10, pp. 474–481, 2008.
- Z. Yu, R. Baserga, L. Chen, C. Wang, M. P. Lisanti, and R. G. Pestell, “MicroRNA, cell cycle, and human breast cancer,” American Journal of Pathology, vol. 176, no. 3, pp. 1058–1064, 2010.
- G. T. Bommer, I. Gerin, Y. Feng et al., “p53-mediated activation of miRNA34 candidate tumor-suppressor genes,” Current Biology, vol. 17, no. 15, pp. 1298–1307, 2007.
- T.-C. Chang, D. Yu, Y.-S. Lee et al., “Widespread microRNA repression by Myc contributes to tumorigenesis,” Nature Genetics, vol. 40, no. 1, pp. 43–50, 2008.
- D. C. Corney, A. Flesken-Nikitin, A. K. Godwin, W. Wang, and A. Y. Nikitin, “MicroRNA-34b and MicroRNA-34c are targets of p53 and cooperate in control of cell proliferation and adhesion-independent growth,” Cancer Research, vol. 67, no. 18, pp. 8433–8438, 2007.
- L. He, X. He, L. P. Lim et al., “A microRNA component of the p53 tumour suppressor network,” Nature, vol. 447, no. 7148, pp. 1130–1134, 2007.
- H. Hermeking, “The miR-34 family in cancer and apoptosis,” Cell Death and Differentiation, vol. 17, no. 2, pp. 193–199, 2010.
- V. Tarasov, P. Jung, B. Verdoodt et al., “Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G 1-arrest,” Cell Cycle, vol. 6, no. 13, pp. 1586–1593, 2007.
- H. Tazawa, N. Tsuchiya, M. Izumiya, and H. Nakagama, “Tumor-suppressive miR-34a induces senescence-like growth arrest through modulation of the E2F pathway in human colon cancer cells,” Proceedings of the National Academy of Sciences of the United States of America, vol. 104, no. 39, pp. 15472–15477, 2007.
- H. I. Suzuki and K. Miyazono, “Emerging complexity of microRNA generation cascades,” Journal of Biochemistry, vol. 149, no. 1, pp. 15–25, 2011.
- L. Santarpia, M. Nicoloso, and G. A. Calin, “MicroRNAs: a complex regulatory network drives the acquisition of malignant cell phenotype,” Endocrine-Related Cancer, vol. 17, no. 1, pp. F51–F75, 2010.
- H. Hermeking, “p53 enters the microRNA world,” Cancer Cell, vol. 12, no. 5, pp. 414–418, 2007.
- R. Guantes and J. F. Poyatos, “Dynamical principles of two-component genetic oscillators,” PLoS Computational Biology, vol. 2, no. 3, pp. 188–197, 2006.
- S. Vasudevan, Y. Tong, and J. A. Steitz, “Switching from repression to activation: microRNAs can up-regulate translation,” Science, vol. 318, no. 5858, pp. 1931–1934, 2007.
- B. Novák and J. J. Tyson, “A model for restriction point control of the mammalian cell cycle,” Journal of Theoretical Biology, vol. 230, no. 4, pp. 563–579, 2004.
- Z. Qu, W. R. MacLellan, and J. N. Weiss, “Dynamics of the cell cycle: checkpoints, sizers, and timers,” Biophysical Journal, vol. 85, no. 6, pp. 3600–3611, 2003.
- Z. Qu, J. N. Weiss, and W. R. MacLellan, “Regulation of the mammalian cell cycle: a model of the G1-to-S transition,” American Journal of Physiology, vol. 284, no. 2, pp. C349–C364, 2003.
- Z. Qu, J. N. Weiss, and W. R. MacLellan, “Coordination of cell growth and cell division: a mathematical modeling study,” Journal of Cell Science, vol. 117, no. 18, pp. 4199–4207, 2004.
- L. Yang, Z. Han, W. Robb MacLellan, J. N. Weiss, and Z. Qu, “Linking cell division to cell growth in a spatiotemporal model of the cell cycle,” Journal of Theoretical Biology, vol. 241, no. 1, pp. 120–133, 2006.
- Z. Han, L. Yang, W. R. MacLellan, J. N. Weiss, and Z. Qu, “Hysteresis and cell cycle transitions: how crucial is it?” Biophysical Journal, vol. 88, no. 3, pp. 1626–1634, 2005.
- B. Pfeuty, T. David-Pfeuty, and K. Kaneko, “Underlying principles of cell fate determination during G1 phase of the mammalian cell cycle,” Cell Cycle, vol. 7, no. 20, pp. 3246–3257, 2008.
- B. Pfeuty, “Strategic cell-cycle regulatory features that provide mammalian cells with tunable G1 length and reversible G1 arrest,” PLoS ONE, vol. 7, no. 4, Article ID e35291, 2012.
- J. J. Tyson, A. Csikasz-Nagy, and B. Novak, “The dynamics of cell cycle regulation,” BioEssays, vol. 24, no. 12, pp. 1095–1109, 2002.
- A. Csikász-Nagy, D. Battogtokh, K. C. Chen, B. Novák, and J. J. Tyson, “Analysis of a generic model of eukaryotic cell-cycle regulation,” Biophysical Journal, vol. 90, no. 12, pp. 4361–4379, 2006.
- C. Gérard and A. Goldbeter, “Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle,” Proceedings of the National Academy of Sciences of the United States of America, vol. 106, no. 51, pp. 21643–21648, 2009.
- C. Gérard and A. Goldbeter, “From simple to complex patterns of oscillatory behavior in a model for the mammalian cell cycle containing multiple oscillatory circuits,” Chaos, vol. 20, no. 4, Article ID 045109, 2010.
- C. Grard and A. Goldbeter, “A skeleton model for the network of cyclin-dependent kinases driving the mammalian cell cycle,” Interface Focus, vol. 1, no. 1, pp. 24–35, 2011.
- A. Altinok, D. Gonze, and F. Levi, “An automaton model for the cell cycle,” Interface Focus, vol. 1, no. 1, pp. 36–47, 2011.
- G. P. Pidgeon, M. Kandouz, A. Meram, and K. V. Honn, “Mechanisms controlling cell cycle arrest and induction of apoptosis after 12-lipoxygenase inhibition in prostate cancer cells,” Cancer Research, vol. 62, no. 9, pp. 2721–2727, 2002.