International Journal of Genomics / 2013 / Article / Tab 7 / Research Article
Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling Stage Table 7 The primers used for real-time PCR in this study.
Probe ID Primer sequences (5′-3′) Annotations Fold change Hua 30 Hua 11 Contig5422_at F: CAATCCTCCAACACCAGTCA R: TCGGCAGGGACATCAAAG Brassinosteroid insensitive 1-associated receptor kinase 1 precursor 0.8 1.15 Contig5740_at F: GAGAATGGTAACGAGGTGG R: GGAGTTGTGTGAGCAGGGA NAC domain-containing protein 0.15 1.15 Contig6159_at F: CCTTCTTTCGTTTCTGCT R: GGCACTATTTCCATTACCT PTF1 0.55 1.5 Contig7044_at F: ACCCTCTACCACAACCGCCTCT R: ACCAACGACAGCCGCAGCA Lung seven transmembrane receptor domain containing protein 0.05 1 Contig10690_at F: ATCGTGTCCTCGTCGTCTTC R: AGTAGGTGGTTGCTGCTC BZip type transcription factor bZIP1 0.15 1.55 Contig20719_at F: ACGACGAGGACAGCGGCAACTT R: TTCACCTTGACGCCTTCTCCAC Receptor-like protein kinase 5 precursor 0.7 4.3 HB03A08_T3_at F: CAGATGATGGCGTTCCTCG R: TGCTCTGTGCTGCCTCCT HSF-type DNA-binding domain containing protein 3.3 5.55 Contig13791_at F: TCTTGGGTGATGAATGTGGTG R: AGGTTCGTGTTCCATCTC Methyltransferase 0.55 1.2 Contig24300_at F: ACAAACAGCATCCGAGCA R: GCCTCCAAAGTTCACATCCT Cytokinin dehydrogenase precursor 0.9 2.4 HC02E04_T3_at F: GAAGAAGGCGGTATGCGT R: CAGTACTTGTGAGGTAGTAGAAC No hits 2.1 6.35
Ten salt-responsive genes in this list were selected randomly based on the microarray. The first seven pairs of primers belong to the shoot tissue, and the remaining belong to the root tissue. F: forward primer. R: reverse primer.