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Journal of Mycology
Volume 2013 (2013), Article ID 324570, 13 pages
Using Commercial Compost as Control Measures against Cucumber Root-Rot Disease
1Plant Pathology Department, Faculty of Agriculture, Cairo University, Giza 12612, Egypt
2Plant Pathology Department, National Research Center, Giza 12622, Egypt
Received 15 February 2013; Revised 17 April 2013; Accepted 19 April 2013
Academic Editor: Praveen Rao Juvvadi
Copyright © 2013 Kamel Kamal Sabet et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Five commercial composts were evaluated to suppress the root-rot pathogens (Fusarium solani (Mart.) App. and Wr, Pythium ultimum Trow, Rhizoctonia solani Kuhn, and Sclerotium rolfsii Sacc.) of cucumber plants under in vitro and greenhouse conditions. In vitro tests showed that all tested unautoclaved and unfiltrated composts water extracts (CWEs) had inhibitor effect against pathogenic fungi, compared to autoclaved and filtrated ones. Also, the inhibitor effects of 40 bacteria and 15 fungi isolated from composts were tested against the mycelial growth of cucumber root-rot pathogens. Twenty two bacteria and twelve fungal isolates had antagonistic effect against root-rot pathogens. The antagonistic fungal isolates were identified as 6 isolates belong to the genus Aspergillus spp., 5 isolates belong to the genus Penicillium spp. and one isolate belong to the genus Chaetomium spp. Under greenhouse conditions, the obtained results in pot experiment using artificial infested soil with cucumber root-rot pathogens showed that the compost amended soil reduced the percentage of disease incidence, pathogenic fungi population, and improved the cucumber vegetative parameters as shoot length, root length, fresh weight, and dry weight. These results suggested that composts are consequently considered as control measure against cucumber root-rot pathogens.
Fusarium solani, Pythium ultimum, Rhizoctonia solani, and Sclerotium rolfsii were considered the most important soilborne pathogens which cause cucumber root-rot disease [1–4]. Suppression of these plant pathogens is considered an urgent need for present agriculture practices. Therefore, the use of compost to suppress the root rot pathogens has been extensively reviewed by many workers [5–8]. Different mechanisms were suggested to explain the role of compost application to control soil-borne plant pathogens such as enhancement beneficial microorganisms which secrete lytic enzymes and antibiotic, containing microorganisms which competed for nutrients, or activation of disease-resistance genes (induce resistance) in plants [6, 9].
Moreover, compost suppressive effects against several soil-borne plant pathogens were recorded such as Pythium spp. [10, 11], Phytophthora spp. [6, 12], Rhizoctonia spp. , and Fusarium spp. . Many studies revealed that Bacillus spp., Enterobacter spp., Pseudomonas spp., Streptomyces spp. and other bacterial genera, as well as Penicillium spp., Aspergillus spp., Trichoderma spp., Gliocladium virens, and other fungi, have been identified as biocontrol agents in compost-amended substrates [15–21].
This work aimed to study the inhibitor effect of five commercial composts against the common four high pathogenic root-rot pathogens, that is, Fusarium solani, Pythium ultimum, Rhizoctonia solani, and Sclerotium rolfsii and their role in improving some vegetative parameters of cucumber plants.
2. Materials and Methods
2.1. Isolation, Identification, and Pathogenicity Test of Cucumber Root-Rot Pathogens
Naturally root-rot infected cucumber plants were collected from some commercial plastic houses located at three Governorates, that is, Giza (El-Dokki and El-Haram locations), Cairo (Gezerit El-Dahab location), and Qualubiyia (Toukh location) during 2010 and 2011 growing seasons. Small pieces (1 cm length) of diseased cucumber roots were cut and then disinfested by immersing in sodium hypochlorite (1%) for 5 min, then washed with serials of sterilized water and dried between two sterilized layers of filter paper. The root pieces were then put onto the surface of sterilized Petri dishes containing water agar medium. After 3 days of incubation at °C, the fungal hyphal tip of developed colonies around the root pieces were picked up and transferred onto Potato Dextrose Agar (PDA) and incubated for 7 days at °C. The growing fungi were identified kindly at the Plant Pathology Department National Research Centre (NRC), Egypt, according to the morphological and cultural characters following the methods described previously [22–26]. The isolated fungi were maintained on PDA medium at 4°C for further studies.
Pathogenic ability of eight fungal isolates, that is, Fusarium moniliforme, F. oxysporum, F. semitectum, F. solani, P. ultimum, R. solani, S. rolfsii, and Sclerotinia sclerotiorum, was evaluated against cucumber Beit-Alpha cv. in pot experiments under greenhouse conditions . The experiment was carried out in autoclaved (121°C for two hours) clay loamy soil (50% sand, 40% clay, and 10% silt) artificially infested with the tested fungal isolates. Fungal mass production used for soil infestation was obtained by growing the tested isolates on sand-barley medium. This natural medium was prepared by mixing sand and barley (1 : 1, w : w and 40% water); then the mixture in glass bottles with cotton plugs was sterilized three times (1 hr each time) at 121°C. The autoclaved medium was then inoculated individually with a 5 mm disk of each tested fungal isolate and incubated at °C for 2 weeks . Soils were infested individually at a ratio of 5% (w : w) with tested pathogenic fungal cultures and mixed thoroughly to ensure equal distribution of fungal inoculum, then filled in plastic pots (25 cm diameter) and irrigated every second day for 1 week before sowing. A set of pots were also amended with the same rate of sand-barley medium free of fungal inoculum and reserved as control treatment. Surface sterilized cucumber seeds Beit-Alpha cv. (using 3% sodium hypochlorite for 5 min, then picked up and air-dried) were planted in both infested and noninfested soils, five seeds per pot and five replicates (pots). The average percentage of pre- and postemergence root-rot incidence was recorded after 15 and 30 days from sowing, respectively. All of described procedures were repeated three times and the average percentages were calculated.
Commercial composts were purchased from the Egyptian Company for Solid Waste Utilization (ECARU), Giza, Egypt. Five types of compost, prepared aerobically for four months, were used in the present work as follows: compost (A): a mixture of different aromatic plants, sugar beet, and sugarcane; compost (B): a mixture of rice straw and animal wastes; compost (C): a mixture of cotton straw and maize straw; compost (D): a mixture of town refuses (domestic waste); compost (E): a mixture of different agricultural residues.
All composts were tested for their efficacy to suppress cucumber root-rot pathogens under laboratory and greenhouse conditions.
2.3. Plant Material
Cucumber seeds (Cucumis sativus L.) cv. Beit-Alpha was used in this study.
2.4. Root-Rot Pathogens
Fusarium solani, Pythium ultimum, Rhizoctonia solani, and Sclerotium rolfsii, which considered the most virulent pathogens causing root-rot disease of cucumber, were used.
2.5. Laboratory Tests
2.5.1. Preparation of Compost Water Extract (CWE)
The CWEs were prepared by vigorously shaking of mature compost, at the ratio of 1 : 2 (w/v) of compost (500 g) to sterile water (1000 mL), for 20 min. To remove large particles from compost mixture, aliquot of 250 mL of the mixture was filtrated by passing through sterile 3 layers of cheesecloth and then the filtrate was centrifuged at 500 rpm for 10 min to obtain active supernatant as stock solution. These procedures were carried out for the five used types of composts.
(1) Inhibitor Effect of Composts. The inhibitor effect of five tested composts as water extracts (CWEs) was examined against the tested pathogenic fungi in vitro using the methods of pouring plate, wells-cut diffusion, and dry weight of fungal mycelium .
(a) Pouring Plate Method. The unautoclaved and autoclaved of CWEs were tested for each tested compost against the pathogenic fungi using the pouring plate method. Aliquots of CWE supernatant stock solution were added to PDA medium to obtain three concentrations of 5, 10 and 15% (v/v). One disc (0.5 cm in diameter) of 7-day-old culture of each pathogenic fungus was separately placed onto the centre of plate containing CWE amended PDA medium. Another set of Petri dishes free of CWEs were used as the control. Five Petri dishes were used as replicates for each treatment as well as the control treatment. All plates were incubated at °C until the control plate was fully covered with fungal mycelial growth. The linear radial mycelial growth of each pathogenic fungus was measured to determine the inhibitor effect of CWEs. The percentages of fungal growth reduction were determined according to the following formula: where is the diameter of mycelial growth in control plates and is the diameter of mycelial growth in treated plates.
(b) Well-Cut Diffusion Method. The unfiltered and filtered of CWEs of stock solution were tested against the pathogenic fungi using the well-cut diffusion method. The CWEs were filtered through 0.22 μm sterilized Millipore membrane filter. Forty mL of sterile PDA medium were used for each plate, three wells were then punched out using a sterile 0.5 cm cork bore, and each of the well bottoms was sealed with two drops of sterile PDA medium. Hundred microlitres of each unfiltered and filtered CWE was separately transferred into each well. The sterile water was used as control. One disc (0.5 cm diameter) of 7-day-old culture of each pathogenic fungus was centrally placed among the wells on the surface of PDA medium. Five Petri dishes were used as replicates for each treatments as well as the control. All plates were incubated at °C for 7 days. After the incubation period, the clear inhibition zones from pathogenic fungus around CWEs wells were measured.
(c) Mycelium Dry Weight Method. The inhibition effect of the unfiltered CWEs was determined against the pathogenic fungi using the fungal mycelium dry weight method. Five milliliters of each CWE was individually added to sterile 95 mL of PDB (Potato Dextrose Broth) medium in flask of 250 mL. Then, each flask was inoculated with one disc (0.5 cm diameter) of 7-day-old culture of each pathogenic fungus. A blank was prepared by adding CWE to the PDB medium without any pathogenic fungus inoculation. The PDB medium inoculated with the pathogenic fungus only as the control. Five flasks were used as replicates for each treatment as well as both the control and the blank. The inoculated flasks were incubated at °C for 7 days. The culture of PDB including the growing microorganisms in treatments, the control and the blank were filtered through 0.22 μm Millipore membrane filter. Then, the dry weight of Millipore membrane filter was determined after drying the membrane at °C until constant weight. The dry weight reduction (%) of compost treatments was calculated according to the following formula: where Blank is dry weight of microbial growth of microorganisms in compost without any pathogenic fungus, Control is dry weight of mycelial growth of pathogenic fungus without compost, and Compost treatment is dry weight of pathogenic fungus + compost.
(2) Isolation of Common Microorganisms from Composts. The common bacteria, fungi, and actinomycetes in fresh composts were isolated using the plate count dilution technique on selective media .
(3) Identification of Isolated Bacteria and Fungi. Identification of the isolated bacteria was carried out in the Plant Pathology Department, NRC, Giza, Egypt, according to the morphological and cultural characters described by [30, 31]. Identification of the isolated fungi was carried out in the Plant Pathology Department, National Research Centre (NRC), Egypt, according to the morphological and cultural characters described by [22, 24, 32].
(4) Assay of the Antagonistic Effect of Isolated Bacteria. The purified forty bacteria isolates were screened for their antagonistic effect against the tested pathogenic fungi using the method described by . Each bacterial isolate was cultured (by streaking) on one side of 9 cm diameter Petri dish containing PDA medium and then a 5 mm plug from the leading edge of a 5-day-old culture of F. solani, P. ultimum, R. solani, or S. rolfsii, individually was cultured on surface of the medium at the opposite side of the same Petri dish. Five Petri dishes were used as replicates for each tested microorganism. Inoculated plates were incubated at °C until the fungal growth of the control reached the edge of the plate. The growth area and reduction in mycelial growth of the pathogenic fungi were calculated according to .
(5) Assay of the Antagonistic Effect of Isolated Fungi. The antagonistic effect of fifteen fungi isolated from composts was evaluated against the tested pathogenic fungi. A 5-mm plugs from 5-day-old culture of each of F. solani, P. ultimum, R. solani, and S. rolfsii, were placed individually on one side of 9 cm diameter Petri dish containing PDA medium and then, 5 mm plugs from 5-day-old culture of the tested isolated fungus (selected from the compost) were placed on the opposite side of Petri dish. Five Petri dishes were used as replicates for each treatment. Inoculated plates were incubated at °C, until the fungal growth of the control plates reached the edge of the plate. The growth area and reduction in mycelial growth of the pathogenic fungi were calculated according to .
2.6. Greenhouse Experiments
The effect of soil amendment with compost on cucumber root-rot disease incidence, the total microbial counts (fungi, bacteria, and actinomycetes), and some vegetative parameters of cucumber (Beit-Alpha cv.) grown in infested soil with root-rot pathogens under greenhouse conditions was evaluated.
A pot experiment was designed under greenhouse conditions using plastic pots (30 cm diameter) containing 5 kg of sterile sandy loam soil infested with the inocula of the fungi tested grown on barely grain at the rate of 4% (w : w) as described earlier. Infested potting soil was irrigated for 15 days before sowing. Infested soil was amended with 25 g//kg soil and mixed together, of each compost one week before seed sowing. Ten surface sterilized cucumber seeds (using 1% sodium hypochlorite for 5 min then picked up and air-dried) were sown in each pot and 5 pots were used for each treatment as replicates. Unamended infested pots were used as control.
Compost amended and unamended infested soils were used to study the following points.
2.6.1. Control of Cucumber Root-Rot Diseases
Disease assessments were recorded as the percentages of root-rot disease incidence at pre- and postemergent stages after 10 and 30 days of seed sowing, respectively, and then three plants per pots were left up to 45 days to determine the effect of compost-amended soil on some vegetative parameters. Percentage of root rot incidence at the preemergence stage was calculated as the number of absent seedlings relative to the number of seeds sown. Meanwhile, the percentage of root rot incidence at the postemergence stage was calculated as the number of diseased plants relative to the number of emerging seedlings.
2.6.2. Effect of Compost-Amended Soil on the Total Microbial Counts
This experiment was conducted to assess the effect of compost-amended soil on the total microbial counts of fungi, bacteria, and actinomycetes as well as frequency of pathogenic fungi comparing with common saprophytic fungi of Aspergillus spp. and Pencillium spp., under artificial infection condition with tested pathogenic fungi in pots. The total microbial counts and frequency (%) of fungi were determined immediately before sowing and at the end of experiment (45 days) as a number of colony forming units (CFU) in one gram of dry soil using the poured plate method and dilution technique . The frequency occurrence of pathogenic fungi, that is, F. solani, P. ultimum, R. solani, and S. rolfsii as well as common saprophytic fungi of Aspergillus spp. and Penicillium spp. were determined at dilutions of 10−4, for each isolated fungus according to the following formula:
2.6.3. Effect of Compost-Amended Soil on Some Plant Vegetative Parameters
The vegetative parameters of cucumber plants, that is, shoot length, root length, fresh, and dry weights were determined at 45 days of plant grown in treated soil with compost and control treatments. A random sample of three cucumber plants of each treatment were removed carefully from the pots, then washed under running water to remove adhering particles. The averages of above vegetative parameters were determined according to .
2.7. Statistical Analysis
The obtained data were subjected to proper statistical analysis of variance according to . Means of treatments were compared with test and LSD at level of 0.05%.
3.1. Cucumber Root-Rot Pathogens
Isolation trails from cucumber plants showed root-rot disease symptoms revealed that the 8 fungal species, that is, Fusarium moniliforme Sheld., F. oxysporum Schlecht ex. fr., F. semitctum Berk and Rav., F. solani, P. ultimum, R. solani, S. rolfsii, and Sclerotinia sclerotiorum (Lib.) de Barywere common fungi. Data presented in Table 1 showed that F. solani, P. ultimum, R. solani, and S. rolfsii proved to be highly pathogenic fungi that they were more able to attack cucumber roots and cause severe root-rot disease than other fungi. During preemergence growth stage, P. ultimum was highly pathogenic fungus that can attack the seed or seedling of cumber before it emerges above the soil surface, causing a seed or preemergence rot followed by S. rolfsii, R. solani, and F. solani. During postemergence growth stage, P. ultimum was highly pathogenic fungus that can attack the seedling of cumber after it emerges above the soil surface, causing damping-off and root-rot followed by S. rolfsii, R. solani, and F. solani.
3.2. Laboratory Tests
3.2.1. Effect of Composts on Root-Rots Pathogens In Vitro
(1) Poured Plate Method. Presented results in Table 2 showed that the unautoclaved compost water extract at concentrations of 5, 10, and 15% had inhibitor effect against tested pathogenic fungi compared to the control treatment. The compost (A) completely inhibited the growth of F. solani, S. rolfsii, and P. ultimum at all tested concentrations, meanwhile it reduced the growth of R. solani by 75.5%. Also, compost (B) at concentration of 15% completely inhibiting (100%) the growth of F. solani was observed followed by 83.3, 82.2, and 68.8% for the growth of R. solani, P. ultimum, and S. rolfsii, respectively. Meanwhile, it had the highest inhibitor effect against R. solani, S. rolfsii and P. ultimum. Results revealed that composts (C), (D), and (E) at concentration of 15% gave moderate inhibitor effect against F. solani, R. solani, S. rolfsii, and P. ultimum. No significant difference was recorded among the tested concentrations of different compost water extracts for reducing the mycelial growth of pathogenic fungi. On the other hand, concerning autoclaved CWEs, it is interesting to note that no inhibitor effect was obtained with autoclaved CWEs against the tested fungi.
(2) Wells-Cut Diffusion Method. Data presented in Table 3 indicated that the unfiltrate CWEs of stock solution reduced the mycelial growth of F. solani, R. solani, S. rolfsii, and P. ultimum observed as zone of inhibition. Compost (A) treatment resulted in zone of inhibited fungal growth measured as 36.0, 16.6, 4.6, and 17.3 mm of F. solani, R. solani, S. rolfsii, and P. ultimum, respectively. Compost (B) gave the inhibition zone of 17.3 and 4.7 mm against R. solani and S. rolfsii, respectively. Meanwhile, no growth of F. solani and P. ultimum was noticed. Results also showed that composts (C), (D), and (E) gave moderate inhibition zone against F. solani, R. solani, S. rolfsii, and P. ultimum. On the other hand, the filtrates of CWEs had no inhibition effect against the mycelial growth of pathogenic fungi.
(3) Dry Weight Assay. Effects of CWEs at concentration of 5% on quantitatively dry weight of pathogenic fungal mycelium are shown in (Table 4). The compost treatments decreased the mycelial dry weight of pathogenic fungi, compared with the control, as an indication for inhibition effect of CWE. Results revealed that compost (B) showed highly inhibitor effect against mycelial dry weight of F. solani, R. solani, S. rolfsii, and P. ultimum, whereas the dry weight reduction (%) was 94.6, 87.5, 79.1, and 96.2%, respectively. Also, composts (A), (C), and (E) showed inhibition effect of about 87.5, 94.8 and 85.2%; 62.8, 67.7 and 77.6%; 56.4, 57.1 and 65.4%, and 82.2, 89.3 and 93.1% of F. solani, R. solani, S. rolfsii, and P. ultimum, respectively. On the other hand, the compost (D) showed moderate inhibition effect against of F. solani, R. solani, S. rolfsii and P. ultimum 76.8, 49.7, 40.5 and 75.1%, respectively Table 4.
3.3. Microbial Analysis of Composts
3.3.1. Microbial Counts
The obtained results showed that the total microbial counts of fungi, bacteria, and actinomycetes are slightly varied in five tested composts. A count of fungi was ranged from to CFU/g. The highest counts of fungi were found in compost (B) as , followed by in composts (E), in compost (C), in compost (A), and in compost (D), respectively. Meanwhile, the count of bacteria ranged from to CFU/g. The highest count of bacteria was found in compost (A) whereas it recorded as , followed by in compost (B), in compost (E), in compost (C), and in compost (D), respectively. The count of actinomycetes ranged from to CFU/g. The highest count of actinomycetes was found in the compost (B) recorded as , followed by in compost (A), in composts (C) and (E), and in compost (D), respectively.
3.3.2. Bacterial Isolates
Forty bacterial isolates were isolated from the tested five composts. Isolation trails followed morphological and cultural characters described by [30, 31]. Details of morphological and cultural characters and compost source are shown in (Table 5).
3.3.3. Antagonistic Effect of Isolated Bacteria
Results revealed that the forty isolated bacteria can be divided into three groups according to their antagonistic effect against the mycelial growth of cucumber root-rot pathogenic fungi in vitro (Table 6). The highest antagonistic effect of bacterial isolates group included 5 isolates of , , , , and that highly reduced the radial mycelial growth of pathogens, whereas the mycelial growth reduction (%) was in the range of 24.4 to 57.8%. The antagonistic effect of bacterial isolates group was recorded for 17 isolates of , , , , , , , , , , , , , , , , and that gave moderate antagonistic effect in reducing the radial growth of the same pathogens, whereas the reduction (%) of mycelial growth was recorded as a range of 10.0 to 46.7%. The nonantagonistic effect of bacterial isolates group included the 18 isolates of , , , , , , , , , , , , , , , , , and , where no mycelial growth reduction (%) was recorded.
3.3.4. Fungal Isolates
Fifteen fungal isolates were isolated from the tested five composts. Isolated fungi were identified as Aspergillus spp., A. niger, Penicillium spp., and Chaetomium spp. (Table 7). The isolated fungi were identified at the Plant Pathology Department, NRC, Egypt, according to the morphological and cultural characters following the methods described previously [22, 24].
3.3.5. Antagonistic Effect of Isolated Fungi
Effects of saprophytic fungi isolated from the tested composts against the cucumber root rot pathogens are shown in Table 7. Results showed that the Aspergillus sp. no. 1, isolated from all composts, showed high antagonistic effect against the radial growth of cucumber root-rot pathogens, reached 3.4 cm (62.2%) for F. solani, 4.4 cm (51.1%). Results also revealed that the A. niger, which isolated also from all composts, showed antagonistic effect against the radial growth of all cucumber root-rot pathogens where the mycelial reduction recorded as 57.7% (3.8 cm) for F. solani, 44.4% (5.0 cm) for R. solani, and 32.2% (6.0 cm) for P. ultimum. The fungus Penicillium sp. no. 2, isolated from composts A, B, and E, gave high antagonistic effect against the radial growth of cucumber root-rot pathogens, reached 60.0% (3.6 cm) for F. solani, 27.7% (6.5 cm) for R. solani and S. rolfsii as well as 46.6% (4.8 cm) for P. ultimum. The fungus of Chaetomium sp., isolated from compost (B), gave the radial myeclial growth reduction reached to 55.5% (4.0 cm) for F. solani, 40.0% (5.4 cm) for R. solani, 34.4% (5.9 cm) for S. rolfsii, and 33.3% (6.0 cm) for P. ultimum, respectively.
3.4. Greenhouse Experiments
The present study was designed to investigate the potential effect of soil amendment with different composts, made from composted agricultural wastes, against root-rot disease incidence, population of soil microflora as well as vegetative growth parameters of cucumber plants grown under artificial infestation with root-rot pathogens in pot experiment under greenhouse conditions.
3.4.1. Effect of Composts Amended Soil on Root-Rot Disease Incidence
Data presented in Table 8 showed that the root-rot disease incidence of cucumber recorded at pre- and postemergent stages was significantly decreased by composts application at rate of 25 g/kg soil in pot. For preemergent stage, compost (B) had a greater suppressive effect against the four pathogenic fungi, whereas the disease reduction reached to 54.5% for F. solani, 62.5% for R. solani, 61.1% for S. rolfsii, and 60.8% for P. ultimum. As for postemergent stage, composts (A) and (B) had a greater disease reduction reached which 54.8% and 74.3% for F. solani, 71.6% and 78.5% for R. solani, 68.3% and 76.7% for S. rolfsii and 62.5% and 72.6% for P. ultimum, respectively. Results also revealed that the other composts (C), (D), and (E) had the moderate suppressive effect against cucumber root-rot pathogens during both pre- and postemergent stages.
3.4.2. Microbial Count
The effects of compost-amended soil on the microbial counts of fungal, bacterial, and actinomycetes, before cucumber sowing (one week after compost incorporation) and after 45 days after sowing, in pots infested with the root-rot pathogens are shown in Table 9. Results showed that the total counts of fungi were in the range of 8.6 to CFU/g and 9.2 to CFU/g, compared with 11.6 to CFU/g and 12.6 to CFU/g in the control treatment before and after sowing, respectively. Meanwhile, bacterial total counts were in the range of 3.6 to CFU/g and 7.2 to CFU/g, compared with 1.2 to CFU/g and 4.6 to CFU/g in the control treatment before and after sowing, respectively. Results also revealed that the total counts of actinomycetes were in the range of 1.2 to CFU/g and 10.0 to CFU/g, compared with 0.4 to and 1.6 to CFU/g in the control treatment before and after sowing, respectively. Compost (B) seems to highly increase the total count of fungi, bacteria, and actinomycetes. In general, the total counts of fungi, bacteria, and actinomycetes were significantly greater detected after 45 days of sowing than in both before sowing and the control treatment as well.
Populations of F. solani, R. solani, S. rolfsii, and P. ultimum, compared with the saprophytic fungi of Aspergillus spp. and Penicillium spp. in the composts-amended soil in the rhizosphere of pots experiment are listed in Table 10. All the tested composts significantly decreased the frequency occurrence of the pathogenic fungi, compared with the untreated soil. Compost (B) was the more effective in reducing the population of pathogenic fungi in before and after of sowing. The frequency percentages were 53.9 and 21.6% for F. solani, 60.8 and 23.4% for R. solani; 52.7% and 24.6% for S. rolfsii; 54.4% and 23.8% for P. ultimum, before and after sowing, respectively. Composts (A), (C), (D), and (E) had moderate effects against the pathogenic fungal population in pots. On the other hand, the effect of the tested composts on the frequency of occurrence of selected saprophytic fungi in the rhizosphere of composts-amended soil also are listed in Table 10. Application of all composts in the soil increased the frequency occurrence of both Aspergillus spp. and Penicillium spp., compared with the untreated soil.
3.4.3. Plant Growth Parameters
Results in Table 11 indicated that the composts-amended soil at the rate of 25 g/kg (compost/soil) significantly improved all plant growth parameters, that is, shoot length, root length, fresh weight, and dry weight under infested soil. Potting soil amended with composts (A) and (B) gave the highest shoot length, root length, fresh weights and dry weight under infested soil. Composts (C), (D), and (E) gave moderate increase in the plant growth parameters.
The obtained results in the present study showed that the fungi of F. solani, R. solani, S. rolfsii, and P. ultimum were the common fungi in the rhizosphere of the cucumber plants and had the highest pathogenic effect to Beit-Alpha cultivar of cucumber plants in the pathogenicity tests. These results are in agreement with those recorded by [3, 4]. They reported that these pathogens considered the most important soil-borne pathogens which cause cucumber root-rot diseases.
In vitro tests, our results revealed that the unautoclaved and unfiltrated aqueous extracts of compost had inhibitor effect against the cucumber root-rot pathogens. They significantly reduced the mycelial growth and reduced the mycelial dry weight, compared with autoclaved and filtrated ones. These results are also in a harmony with those obtained by [29, 36, 37]. They reported that the diseases suppression by composts is due to biotic rather than biotic factors, in addition to the presence of protease, chitinase, lipase, and β-1, 3 glucanase secrete by microbes in unautoclaved and unfiltrated composts.
The microbial activity in composts is considered to be crucial in suppressive media. Therefore, the enumeration of microorganisms in the present research was made to know the microbial population in the tested composts because the plate counts method is a useful technique for isolating microorganisms . Our results indicated that the different composts have the numbers of Gram positive and Gram negative bacteria which have suppressive effects against the mycelial growth of root-rot pathogens under in vitro conditions. Results also showed that some saprophytic fungi belonging to the following genera, that is, Aspergillus, Pencillium, and Chaetomium, which had suppressive effects against the mycelial growth of pathogens under in vitro conditions were common in tested composts. Similar results were also obtained by [17, 39]. They reported that the suppression capacity could be due to compost’s recolonization by effective biocontrol agents after peak heating occurred in the composting process and the large numbers of microbes appeared in grape marc compost and most of them were Gram negative bacteria. In this concern,  also recorded that the Gram negative bacteria were found to be the predominant biocontrol agents in suppressive bark compost, while the Gram negative genera identified in mature compost as Pseudomonas (28%), Serratia (20%), Klebsiella (11%), and Enterrobacter (5%) and also Gram positive bacteria were identified as Bacillus spp. . Furthermore, results obtained by [42–44] mentioned that the most dominant fungi cultured from composts are species of Aspergillus, Chaetomium, and Pencillium. Moreover, in vitro tests, the isolated fungi and bacteria from composts demonstrated their potential antagonistic effect against cucumber root-rot pathogens. The isolated fungi showed the three probable mechanisms of action: (i) mycoparasitism, involving direct contact between the tested antagonist and cucumber root-rot pathogens, (ii) production of antibiotic-type secondary metabolites, which spread through the medium, where the clear band that separates the antagonist from the pathogen, and (iii) competition for nutrients and space, where the growth in control was fast, than composts treatments. However, the bacteria only, showed the (ii) and (iii) mentioned mechanisms that they could inhibit cucumber root-rot pathogens .
In greenhouse experiments, our results revealed that the compost treatments were effective in reducing the pre- and postemergence root-rot disease of cucumber under artificiall infection conditions. These are may be due to the microbial population in compost amendments which play an important role in enhancing the competition and/or antagonism among microbes, leading to a decrease in the plant pathogens activity. Our results suggest that the maximum suppression of cucumber root-rot pathogens was obtained in compost amended potting soil with composts (A) and (B), while composts (C), (D), and (E) gave moderate suppression in this regard. These results indicated that the increase of rhizospheric population of Aspergillus spp. and Penicillium spp. may play an antagonistic role against F. solani, R. solani, S. rolfsii and P. ultimum which lead to reducing root-rot disease incidence of cucumber.
Our results showed that the total counts of fungi, bacteria, and actinomycetes in the rhizosphere of cucumber plants grown in compost amended soil were significantly higher than those in the unamended one. This is in harmony with the results obtained by . They found that the frequency of occurrence of the tested pathogenic fungi was lower than saprophytic fungi, whereas the number of colony forming units of bacteria and fungi increased when pig manure compost was added to soil. Furthermore, the obtained results also showed that the most predominant fungi isolated from the amended soil were Aspergillus spp. and Penicillium spp. These fungi were reported to have great inhibition effect on soil-borne pathogens .
In the present study, the composts treatment significantly increased the growth parameters such as shoot length, root length, fresh weight, and dry weight, compared with the control treatment. The highest increase in the growth parameters were obtained by compost amended soil with compost (B). Similar results are also obtained by . They reported that the 54% of plant growth-promoting bacteria (PGPB) were isolated from farm waste compost (FWC) and 56% from rice straw compost (RSC) which significantly increased the shoot length, leaf area, root length density, and plant weight of Pearl millet. The maximum increase in plant weight was by Serratia marcescens EB67 (56%), Pseudomonas sp. CDB 35 (52%), and Bacillus circulans EB 35 . Plant growth-promoting bacteria (PGPB) directly stimulate growth by nitrogen fixation , solubilization of nutrients , production of growth hormones, 1-amino-cyclopropane-1-carboxylate (ACC) deaminase, and indirectly by antagonizing pathogenic fungi by production of siderophores, chitinase, β-1,3-glucanase, antibiotics, fluorescent pigments, and cyanide . In this concern, it was also reported that soil amendment with agricultural wastes alone or in combination with Biocontrol agents was recommended for controlling soil borne pathogens and increasing the yield of many crops; sugarcane bagasse degraded by Trichoderma spp. was used as soil amendment to improve growth and yield of rice and pea . In the present study, the tested compost (A) (mixture of different aromatic plants, sugar beet and sugarcane) and compost (B) (mixture of rice straw and animal wastes) showed promising effective effect on root rot incidence, soil microbial counts, and plant vegetative growth as well. Also, in the newly cultivated soil organic material is frequently recommended to prevent the increase of pathogens, and this was attributed to unfavorable conditions that are produced by organic and biocompost soil amendments as well; such soil treatments enhance toxicity and antagonistic ability of biocontrol agents against soil borne plant pathogens. These probably contributed to the higher nutrient contents, which could be found with organic amendments [51, 52].
In the light of the present findings, it could be suggested that amending soil with composts is considered as potential biocontrol agent against cucumber root-rot pathogen and improves the plant growth as well.
The authors would like to thank Professor Dr. H. Abd-El-Khair, Plant Pathology Department Bacteriology Laboratory, National Research Center, Giza, Egypt, for providing help and supported in the part of bacterial isolates identification.
- D. P. Roberts, S. M. Lohrke, S. L. F. Meyer et al., “Biocontrol agents applied individually and in combination for suppression of soilborne diseases of cucumber,” Crop Protection, vol. 24, no. 2, pp. 141–155, 2005.
- Z. Haikal-Nahed, “Improving biological control of Fusarium root-rot in cucumber (Cucumis sativus L.) by allelopathic plant extracts,” International Journal of Agriculture and Biology, vol. 9, pp. 459–461, 2007.
- Z. Jinghua, W. Chang Chang, W. Xu, W. Hanlian, and T. Shuge, “Allelopathy of diseased survival on cucumber fusarium wilt,” Acta Phytophylacica Sinica, vol. 35, pp. 317–321, 2008.
- F. Abd-El-Kareem, “Effect of acetic acid fumigation on soil-borne fungi and cucumber root rot disease under greenhouse conditions,” Archives of Phytopathology and Plant Protection, vol. 42, no. 3, pp. 213–220, 2009.
- T. J. J. de Ceuster and H. A. J. Hoitink, “Using compost to control plant diseases,” Biocycle, vol. 40, no. 6, pp. 61–64, 1999.
- H. A. J. Hoitink and M. J. Boehm, “Biocontrol within the context of soil microbial communities: a substrate-dependent phenomenon,” Annual Review of Phytopathology, vol. 37, pp. 427–446, 1999.
- H. A. J. Hoitink, M. S. Krause, and D. Y. Han, “Spectrum and mechanisms of plant disease control with composts,” in Compost Utilization in Horticultural Cropping Systems, P. J. Stoffella and B. A. Kahn, Eds., p. 263, Lewis Publishers, Boca Raton, Fla, USA, 2001.
- J. Ryckeboer, “Biowaste and yard waste composts: microbiological and hygienic aspects-suppressiveness to plant diseases,” Annals of Microbiology, vol. 53, pp. 143–147, 2001.
- A. M. Litterick, L. Harrier, P. Wallace, C. A. Watson, and M. Wood, “The role of uncomposted materials, composts, manures, and compost extracts in reducing pest and disease incidence and severity in sustainable temperate agricultural and horticultural crop production—a review,” Critical Reviews in Plant Sciences, vol. 23, no. 6, pp. 453–479, 2004.
- R. Mandelbaum and Y. Hadar, “Effects of available carbon source on microbial activity and suppression of Pythium aphanidermatum in compost and peat container media,” Phytopathology, vol. 80, pp. 794–804, 1990.
- J. A. Pascual, T. Hernández, C. García, F. A. de Leij, and J. M. Lynch, “Long-term suppression of Pythium ultimun in arid soils using fresh and composted municipal wastes,” Biology and Fertility of Soils, vol. 30, pp. 478–484, 2000.
- T. L. Widmer, J. H. Graham, and D. J. Mitchell, “Composted municipal solid wastes promote growth of young citrus trees infested with Phytophthora nicotianae,” Compost Science and Utilization, vol. 7, no. 2, pp. 6–16, 1999.
- G. Tuitert, M. Szczech, and G. J. Bollen, “Suppression of Rhizoctonia solani in potting mixtures amended with compost made from organic household waste,” Phytopathology, vol. 88, no. 8, pp. 764–773, 1998.
- F. Suárez-Estrella, G. C. Vargas, M. J. López, C. Capel, and J. Moreno, “Antagonistic activity of bacteria and fungi from horticultural compost against Fusarium oxysporum f. sp. melonis,” Crop Protection, vol. 26, no. 1, pp. 46–53, 2007.
- Y. R. Chung and H. A. J. Hoitink, “Interactions between thermophilic fungi and Trichoderma hamatum in suppression of Rhizoctonia damping-off in a bark compost-amended container medium,” Phytopathology, vol. 80, pp. 73–77, 1990.
- B. Gorodecki and Y. Hadar, “Suppression of Rhizoctonia solani and Sclerotium rolfsii diseases in container media containing composted separated cattle manure and composted grape marc,” Crop Protection, vol. 9, no. 4, pp. 271–274, 1990.
- C. G. Phae, M. Saski, M. Shoda, and H. Kubota, “Characteristic of Bacillus subtilis isolated from composts suppressing phytopathogenic micro-organisms,” Soil Science & Plant Nutrition, vol. 36, pp. 575–586, 1990.
- Y. Hadar and B. Gorodecki, “Suppression of germination of sclerotia of Sclerotium rolfsii in compost,” Soil Biology and Biochemistry, vol. 23, no. 3, pp. 303–306, 1991.
- G. E. S. J. Hardy and K. Sivasithamparam, “Suppression of Phytophthora root rot by a composted Eucalyptus bark mix,” Australian Journal of Botany, vol. 39, no. 2, pp. 153–159, 1991.
- H. A. J. Hoitink, M. J. Boehm, and Y. Hadar, “Mechanisms of suppression of soilborne plant pathogens in compost-amended substrates,” in Science and Engineering of Composting: Design, Environmental, Microbiological and Utilization Aspects, H. A. J. Hoitink and H. M. Keener, Eds., pp. 601–621, Renaissance Publications, Worthington, Ohio, USA, 1993.
- H. A. J. Hoitink, A. G. Stone, and D. Y. Han, “Suppression of plant diseases by composts,” HortScience, vol. 32, no. 2, pp. 184–187, 1997.
- J. B. Gilmam, A Manual of Soil Fungi, Iowa State College Press, Ames, Iowa, USA, 1957.
- C. Booth, The Genus Fusarium, Commonwealth Mycological Institute, Surrey, UK, 1971.
- M. B. Ellis, Dematiaceous Hyphomycetes, Commonwealth Mycological Institute, (CAB), Surrey, UK, 1971.
- H. L. Barnett and B. B. Hunter, Illustrated Genera of Imperfect Fungi, Burgess Publishing Company, Minneapolis, Minn, USA, 1972.
- B. Sneh, B. lee, and O. Akira, Identification of Rhizoctonia Species, The American Pytopathological Society, St. Paul, Minn, USA, 1991.
- S. M. Morsy, E. A. Drgham, and G. M. Mohamed, “Effect of garlic and onion extracts or their intercropping on suppressing damping-off and powdery mildew diseases and growth characteristics of cucumber,” Egyptian Journal of Phytopathology, vol. 37, no. 1, pp. 35–46, 2009.
- L. Singleton, J. Mihail, and C. Rush, Methods for Research on Soil-Borne Phytopathogenic Fungi, The American Phytopathological Society, St. Paul, Minn, USA, 1992.
- M. H. El-Masry, A. I. Khalil, M. S. Hassouna, and H. A. H. Ibrahim, “In situ and in vitro suppressive effect of agricultural composts and their water extracts on some phytopathogenic fungi,” World Journal of Microbiology and Biotechnology, vol. 18, no. 6, pp. 551–558, 2002.
- W. J. Dowson, Plant Diseases Due to Bacteria, Cambridge University Press, London, UK, 1957.
- R. A. Lelliott and D. E. Stead, Methods for the Diagnosis of Bacterial Diseases of Plants, Blackwell Scientific Publications, London, UK, 1987.
- C. Ramirez, Manual and Atlas of the Penicilla, Elserier, New York, NY, USA, 1982.
- N. J. Fokkema, “The rôle of saprophytic fungi in antagonism against Drechslera sorokiniana (Helminthosporium sativum) on agar plates and on rye leaves with pollen,” Physiological Plant Pathology, vol. 3, no. 2, pp. 195–205, 1973.
- A. S. Dukare, R. Prasanna, S. Chandra Dubey et al., “Evaluating novel microbe amended composts as biocontrol agents in tomato,” Crop Protection, vol. 30, no. 4, pp. 436–442, 2011.
- G. W. Snedecor and G. W. Cochran, Statistical Methods, Iowa State University Press, Ames, Iowa, USA, 7th edition, 1982.
- R. Reuveni, M. Raviv, A. Krasnovsky et al., “Compost induces protection against Fusarium oxysporum in sweet basil,” Crop Protection, vol. 21, no. 7, pp. 583–587, 2002.
- P. Garbeva, J. A. van Veen, and J. D. van Elsas, “Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes,” FEMS Microbiology Ecology, vol. 47, no. 1, pp. 51–64, 2004.
- A. G. I. Wollum, “Cultural methods for soil microorganisms,” in Methods of Soil Analysis, Part 2: Chemical and Microbiological Properties, R. H. Miller and D. R. Keeney, Eds., pp. 781–802, Soil Scince Society of America, Madison, Wis, USA, 1982.
- M. Santos, F. Diánez, M. G. del Valle, and J. C. Tello, “Grape marc compost: microbial studies and suppression of soil-borne mycosis in vegetable seedlings,” World Journal of Microbiology and Biotechnology, vol. 24, no. 8, pp. 1493–1505, 2008.
- O. C. H. Kwok, P. C. Fahy, H. A. J. Hoitink, and G. A. Kuter, “Interactions between bacteria and Trichoderma hamatum in suppression of Rhizoctonia damping-off in bark compost media,” Phytopathology, vol. 77, pp. 1206–1212, 1987.
- J. I. Boulter, J. T. Trevors, and G. J. Boland, “Microbial studies of compost: bacterial identification, and their potential for turfgrass pathogen suppression,” World Journal of Microbiology and Biotechnology, vol. 18, no. 7, pp. 661–671, 2002.
- A. Ghazifard, R. Kasra-Kermanshahi, and Z. E. Far, “Identification of thermophilic and mesophilic bacteria and fungi in Esfahan (Iran) municipal solid waste compost,” Waste Management and Research, vol. 19, no. 3, pp. 257–261, 2001.
- B. Vijay, S. R. Sharma, and T. N. Lakhanpal, “Role of thermophilic fungi in compost production for Agaricus bisporus,” Journal of Mycology and Plant Pathology, vol. 32, pp. 204–210, 2002.
- A. Anastasi, G. C. Varese, and V. F. Marchisio, “Isolation and identification of fungal communities in compost and vermicompost,” Mycologia, vol. 97, no. 1, pp. 33–44, 2005.
- H. Y. Weon, J. S. Kwon, J. S. Suh, and W. Y. Choi, “Soil microbial flora and chemical properties as influenced by the application of pig manure compost,” Korean Journal of Soil Science and Fertilize, vol. 32, pp. 76–83, 1999.
- B. Hameeda, O. P. Rupela, G. Reddy, and K. Satyavani, “Application of plant growth-promoting bacteria associated with composts and macrofauna for growth promotion of Pearl millet (Pennisetum glaucum L.),” Biology and Fertility of Soils, vol. 43, no. 2, pp. 221–227, 2006.
- J. Han, L. Sun, X. Dong et al., “Characterization of a novel plant growth-promoting bacteria strain Delftia tsuruhatensis HR4 both as a diazotroph and a potential biocontrol agent against various plant pathogens,” Systematic and Applied Microbiology, vol. 28, no. 1, pp. 66–76, 2005.
- H. Rodriguez and R. Fraga, “Phosphate solubilizing bacteria and their role in plant growth promotion,” Biotechnology Advances, vol. 17, pp. 319–339, 1999.
- K. K. Pal, K. V. B. R. Tilak, A. K. Saxcna, R. Dey, and C. S. Singh, “Suppression of maize root diseases caused by Macrophomina phaseolina, Fusarium moniliforme and Fusarium graminearum by plant growth promoting rhizobacteria,” Microbiological Research, vol. 156, no. 3, pp. 209–223, 2001.
- S. Mitra and B. Nandi, “Biodegraded agro industrial wastes as soil amendments for plant growth,” Journal of Mycopathology Research, vol. 32, pp. 101–109, 1994.
- T. J. J. Ceuster and H. A. J. Hoitink, “Using compost to control plant diseases,” BioCycle, vol. 40, no. 6, pp. 61–64, 1999.
- A. Yogev, M. Raviv, Y. Hadar, R. Cohen, and J. Katan, “Plant waste-based composts suppressive to diseases caused by pathogenic Fusarium oxysporum,” European Journal of Plant Pathology, vol. 116, no. 4, pp. 267–278, 2006.