Research Article
Assigning Significance in Label-Free Quantitative Proteomics to Include Single-Peptide-Hit Proteins with Low Replicates
Table 3
Numbers of differentially regulated proteins selected with PLGEM-STN alone or in combination with MPSP.
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| alse positives (FP) were selected from sample pair c/c. Positives (P) were selected from sample pair /. False discovery rate (FDR) was FP/P. The four permuted sample pairings (I–IV) were generated from the four LC/MS injections for a sample pair. See text. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||