Molecular Biology International / 2011 / Article / Tab 1 / Research Article
Allelic Diversity of Major Histocompatibility Complex Class II DRB Gene in Indian Cattle and Buffalo Table 1 Comparison of average rate of nonsynonymous (dN) and synonymous (dS) substitutions with standard errors obtained through 1000 bootstrap replicates in parentheses for the peptide-binding region (PBR) and non-peptide binding region (non-PBR) and their ratio among different
BoLA-DRB3 alleles.
: number of codons.
Alleles No alleles Positions
d (K2p)dN (SE)dS (SE)dN/dS
Indian cattle 22 PBR 22 0.283(0.042) 0.332(0.064) 0.139(0.050) 2.38 .008 Non-PBR 56 0.069(0.012) 0.074(0.018) 0.055(0.018) 1.34 .211 All 78 0.123(0.014) 0.137(0.022) 0.076(0.019) 1.80 .009 BoLA alleles89 PBR 22 0.256(0.041) 0.311(0.072) 0.102(0.039) 3.05 .003 Non-PBR 56 0.035(0.008) 0.039(0.013) 0.019(0.013) 2.05 .140 All 78 0.090(0.012) 0.105(0.021) 0.041(0.014) 2.56 .002 Sheep 55 PBR 22 0.176(0.033) 0.223(0.062) 0.041(0.025) 5.43 .001 Non-PBR 56 0.042(0.009) 0.045(0.013) 0.037(0.014) 1.21 1.000 All 78 0.077(0.011) 0.087(0.018) 0.045(0.014) 1.93 .019 Goat 20 PBR 22 0.218(0.038) 0.269(0.067) 0.065(0.031) 4.13 .001 Non-PBR 56 0.058(0.011) 0.062(0.015) 0.046(0.017) 1.34 .200 All 78 0.099(0.013) 0.114(0.019) 0.050(0.014) 2.28 .002 Buffalo 28 PBR 22 0.238(0.039) 0.277(0.067) 0.120(0.064) 2.30 .025 Non-PBR 56 0.079(0.013) 0.065(0.014) 0.126(0.031) 0.51 1.000 All 78 0.118(0.014) 0.127(0.021) 0.097(0.020) 1.30 1.000 Big horn sheep 21 PBR 22 0.224(0.042) 0.294(0.073) 0.033(0.018) 8.90 .000 Non-PBR 56 0.045(0.010) 0.046(0.012) 0.044(0.020) 1.04 .470 All 78 0.090(0.013) 0.106(0.019) 0.041(0.015) 2.58 .005 White tailed deer 15 PBR 22 0.254(0.046) 0.327(0.079) 0.061(0.028) 5.36 .000 Non-PBR 56 0.062(0.011) 0.065(0.015) 0.054(0.021) 1.20 .286 All 78 0.110(0.014) 0.128(0.023) 0.055(0.016) 2.32 .002 Red deer 24 PBR 20 0.235(0.038) 0.282(0.068) 0.108(0.045) 2.61 .007 Non-PBR 55 0.064(0.011) 0.067(0.016) 0.055(0.022) 1.21 .126 All 75 0.105(0.013) 0.117(0.022) 0.068(0.019) 1.72 .003
