International Journal of Evolutionary Biology

Research Article

Distribution of Genes Encoding Nucleoid-Associated Protein Homologs in Plasmids

Table 5

Plasmids containing the gene encoding MvaT or NdpA homolog^a.


Plasmid name	Accession no.	Source organism	Length (nt)	G+C content (%)^b	Identity (%)^c	Query coverage (%)	Subject start	Subject end	Classification^d	MOB family^e

MvaT

pCAR1	NC_004444	Pseudomonas resinovorans	199035	56	61	98	77640	77993	−	MOB_H
pQBR103	NC_009444	Pseudomonas fluorescens SBW25	425094	53	61	96	98076	97717	−
pWW53	NC_008275	Pseudomonas putida	107929	57	61	98	8415	8768	−

NdpA

p0908	NC_010113	Vibrio sp. 0908	81413	49	51	99	79731	78736	−
pCAR1	NC_004444	Pseudomonas resinovorans	199035	56	36	98	95390	94395	−	MOB_H
pQBR103	NC_009444	Pseudomonas fluorescens SBW25	425094	53	31	99	161413	160400	−

^aThis list is the result of a TBLASTN analysis using the amino acid sequence of MvaT or NdpA as a query under strict conditions (i.e., thresholds of 30% identity and 70% query coverage).
^bAverage G+C content of the plasmid.
^cReported TBLASTN identity to MvaT or NdpA.
^dPlasmid classification according to its source organism (−, Gram-negative plasmid).
^ePlasmid classification according to its relaxase gene sequence as described by Garcillán-Barcia et al. [16].